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Programming Language > R

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11 projects in result set.

0. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
Development Status : 2 - Pre-Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Operating System : POSIX : Linux (Now Filtering) Programming Language : R [Filter] Topic : Bioinformatics [Filter] Topic : Genetics (Now Filtering)	Activity Percentile: 0.00 Registered: 2011-08-17 20:46

1. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.

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Topic : Bioinformatics : Statistics [Filter]
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Registered: 2010-03-05 10:51

2. CNVScope - CNVScope: Visually exploring copy number aberrations in cancer genomes

Development Status : 5 - Production/Stable [Filter]
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Registered: 2019-07-16 15:34

3. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.

Development Status : 5 - Production/Stable [Filter]
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Registered: 2010-01-08 16:59

4. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.

Development Status : 3 - Alpha [Filter]
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Programming Language : C/C\+\+ [Filter]
Programming Language : Fortran [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics [Filter]
Topic : Genetics (Now Filtering)
Topic : Graphical Models [Filter]

Activity Percentile: 0.00

Registered: 2011-01-07 17:53

5. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.

Development Status : 5 - Production/Stable [Filter]
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Registered: 2011-08-19 15:59

6. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs.

Development Status : 5 - Production/Stable [Filter]
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Registered: 2011-03-23 10:20

7. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.

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Registered: 2013-12-19 15:12

8. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp

Development Status : 4 - Beta [Filter]
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Registered: 2013-05-29 18:34

9. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.

Development Status : 3 - Alpha [Filter]
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Registered: 2016-04-21 23:06

10. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.

Development Status : 5 - Production/Stable [Filter]
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Programming Language : PHP [Filter]
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Topic : Graphics : Plotting [Filter]

Registered: 2009-06-19 09:14