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81 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Bioinformatics : Visualization [Filter]
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Registered: 2010-01-08 16:59 |
1. rGEDI - rGEDI: NASA's Global Ecosystem Dynamics Investigation (GEDI) Data Visualization and Processing
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- Development Status : 4 - Beta [Filter]
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
- Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
- Topic : Spatial Data & Statistics : Reading and Writing Spatial Data [Filter]
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Registered: 2020-03-12 20:57 |
2. RXKCD - This package allows the visualization of your favorite XKCD comic strip directly from R
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2011-07-10 13:54 |
3. TreeHotspots - Classification trees can identify multiple clusters at many different scales at various angles.
We find "hotspots", i.e. regions of high and low densities or rates w.r.t. some baseline.
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- Development Status : 3 - Alpha [Filter]
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- Programming Language : R [Filter]
- Topic : Cluster Analysis : Partitioning Clustering [Filter]
- Topic : Spatial Data & Statistics : Disease Mapping and Areal Data Analysis [Filter]
- Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
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Registered: 2016-03-16 13:24 |
4. NeuroSpatCo - The package is used to search for patterns of organization in human prefrontal cortex of both horizontal (cell body) and vertical plane (minicolumns).
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
- Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
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Registered: 2011-05-10 20:54 |
5. OUwie - Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck (OU) models that allow the strength of selection and drift to vary across selective regimes.
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- Topic : Genetics : Phylogenetics [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2011-07-13 13:38 |
6. netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach.
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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Registered: 2013-07-26 14:26 |
7. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.
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Registered: 2016-04-21 23:06 |
8. glarma - Functions are provided for estimation, testing, diagnostic checking and forecasting of generalized linear autoregressive moving average (GLARMA) models for discrete valued time series with regression variables. These are a class of observation driven non-linear non-Gaussian state space models.
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- Topic : Time Series [Filter]
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Registered: 2025-04-01 01:16 |
9. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.
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- Development Status : 4 - Beta [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2012-07-12 22:01 |
10. Atlas and Analysis - Atlas and Analysis (A2) of pathways (curated)
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Registered: 2018-01-19 16:21 |
11. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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Registered: 2014-01-22 14:22 |
12. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
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Registered: 2016-04-01 13:46 |
13. Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model.
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- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2012-07-03 03:50 |
14. Test for point containment in polyhedron - This project provides a function to test whether a point is contained within a closed three-dimensional polyhedron, defined by a triangular mesh. A two-dimensional version for polygons is also provided.
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- Topic : Chemoinformatics [Filter]
- Topic : Graphical Models [Filter]
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Registered: 2010-04-25 17:27 |
15. TSP - Traveling Salesperson Problem - Basic infrastructure and some algorithms for the traveling salesperson problem (TSP). The package is now maintained on github at http://github.com/mhahsler/TSP
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- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
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Registered: 2007-02-20 12:47 |
16. ROI - R Optimization Infrastructure - The project ROI offers an infrastructure package for optimization. Its aim is to facilitate the usage of different mixed integer programming (MIP) solvers by providing a single interface.
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- Development Status : 1 - Planning [Filter]
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- Natural Language : German [Filter]
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- Topic : Optimization : Mathematical Programming [Filter]
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Registered: 2008-11-25 11:36 |
17. rgl: 3D visualization support - rgl development has moved to Github.
rgl is a 3D visualization system based on OpenGL. It provides a medium to high level interface for use in R, currently modelled on classic R graphics, with extensions to allow for interaction.
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- Topic : Graphics : Dynamic Graphics [Filter]
- Topic : Graphics : Graphics Systems [Filter]
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Registered: 2008-08-16 13:50 |
18. CorReg - find a structure explaining correlations between covariates and use it to compute linear regression. It provides an efficient new estimator for recursive SEM.
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- Natural Language : French [Filter]
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- Topic : Econometrics : Linear Regression Models [Filter]
- Topic : Regression Models [Filter]
- Topic : Robust Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2013-11-14 14:32 |
19. seriation - Infrastructure for seriation - Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Seriation is now maintained on githup at http://github.com/mhahsler/seriation
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- Programming Language : Fortran [Filter]
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- Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]
- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
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Registered: 2008-02-01 22:32 |
81 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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