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28 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD.

Development Status : 4 - Beta [Filter]
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Registered: 2009-06-17 16:54

1. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Medical Science [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-03-23 10:20

2. Rcplex - Interface to the CPLEX optimization engine. Supports Linux and Windows.

Development Status : 4 - Beta [Filter]
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Topic : Optimization : Mathematical Programming : Integer Programming [Filter]
Topic : Optimization : Mathematical Programming : Linear Programming [Filter]
Topic : Optimization : Mathematical Programming : Quadratic Programming [Filter]

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Registered: 2008-08-04 05:27

3. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.

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Topic : Bioinformatics [Filter]
Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]

Registered: 2013-01-21 21:13

4. Bayesian Estimation and Model Checking - This package mainly deals with generalized linear spatial models in Bayesian way for estimation, prediction and model checking.

Development Status : 4 - Beta [Filter]
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Topic : Bayesian Statistics [Filter]
Topic : Multivariate Statistics [Filter]
Topic : Spatial Data & Statistics : Geostatistics [Filter]

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Registered: 2011-08-18 03:20

5. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.

Development Status : 3 - Alpha [Filter]
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Topic : Bayesian Statistics [Filter]
Topic : Genetics [Filter]
Topic : Graphical Models [Filter]

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Registered: 2011-01-07 17:53

6. Protocol for Adjust & Select Models - This project is about modeling species abundances in communities.

Development Status : 1 - Planning [Filter]
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Registered: 2011-01-18 16:54

7. Species Abundance Distributions - Tools to fit and compare models of species abundance distribution using likelihood-based methods

Development Status : 1 - Planning [Filter]
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Topic : Environmetrics [Filter]
Topic : Spatial Data & Statistics : Ecological Analysis [Filter]

Registered: 2011-01-24 12:50

8. move: analyze animal movement data - move is a package that contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyse animal movement data. Move addresses movement ecological questions.

Development Status : 4 - Beta [Filter]
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Natural Language : German [Filter]
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Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]

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Registered: 2012-03-28 07:52

9. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

Development Status : 4 - Beta [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2010-04-01 17:54

10. wtJonckheere - Non-parametric Jonckheere-Terpstra trend test on weighted data

Development Status : 2 - Pre-Alpha [Filter]
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Topic : Robust Statistics [Filter]

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Registered: 2014-06-20 10:11

11. vcf2geno: reading VCF made easy - Efficiently Read Variant Call Format (VCF) into R

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Registered: 2012-08-22 01:29

12. Estimation and Model Checking for GLSM - This package mainly deals with generalized linear spatial models for estimation, model checking and prediction by using MCMC algorithms.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Spatial Data & Statistics : Geostatistics [Filter]

Activity Percentile: 0.00

Registered: 2011-08-17 10:52

13. X-METRIC Inventory Optimizations - Multi-Echelon Techniques for Recoverable Item Control and its variants MOD-METRIC, VARI-METRIC and related extensions

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Topic : Optimization [Filter]

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Registered: 2013-08-24 22:00

14. Test for point containment in polyhedron - This project provides a function to test whether a point is contained within a closed three-dimensional polyhedron, defined by a triangular mesh. A two-dimensional version for polygons is also provided.

Development Status : 4 - Beta [Filter]
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Topic : Chemoinformatics [Filter]
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Registered: 2010-04-25 17:27

15. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

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Registered: 2009-02-18 10:01

16. doSMP - The doSMP package provides a parallel backend to the foreach package's %dopar% operator, allowing parallel operation on a symmetric multiprocessor workstation.

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Registered: 2010-11-19 22:27

17. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.

Development Status : 3 - Alpha [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]

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Registered: 2016-02-18 15:57

18. rGEDI - rGEDI: NASA's Global Ecosystem Dynamics Investigation (GEDI) Data Visualization and Processing

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Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
Topic : Spatial Data & Statistics : Reading and Writing Spatial Data [Filter]

Activity Percentile: 0.00

Registered: 2020-03-12 20:57

19. Extremal Dependence - Extremal Dependence package provides parametric and nonparametric statistical methods for modelling and estimating the dependence of extreme values

Development Status : 5 - Production/Stable [Filter]
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Topic : Multivariate Statistics : Modelling Non-Gaussian Data [Filter]
Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]
Topic : Spatial Data & Statistics : Geostatistics [Filter]

Activity Percentile: 0.00

Registered: 2014-12-02 11:09

28 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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