Software Map

Project Tree

Project Tree

Now limiting view to projects in the following categories:
Operating System :: POSIX :: Linux [Remove This Filter]
License :: OSI Approved :: GNU General Public License (GPL) [Remove This Filter]
Topic :: Bioinformatics :: Statistics [Remove This Filter]
Environment :: Console (Text Based) [Remove This Filter]

License > OSI Approved > GNU General Public License (GPL)

Browse By:

10 projects in result set.

0. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.

Environment : Console (Text Based) (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : POSIX : Linux (Now Filtering)
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2013-12-19 15:12

1. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
Intended Audience : Other Audience [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
Operating System : POSIX : Linux (Now Filtering)
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : QTL Mapping [Filter]

Activity Percentile: 0.00

Registered: 2009-10-07 19:54

2. mixOmics - mixOmics is an R package that supplies different methodologies to unravel relationships between two heterogeneous data sets of size n × p and n × q where the p and q variables are measured on the same samples or individuals n.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : Developers [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Natural Language : French [Filter]
Operating System : Microsoft [Filter]
Operating System : POSIX : Linux (Now Filtering)
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
Topic : Multivariate Statistics : Projection Methods : Canonical Correlation [Filter]

Activity Percentile: 0.00

Registered: 2010-06-25 04:17

3. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area. See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details.
Environment : Console (Text Based) (Now Filtering) Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : POSIX : Linux (Now Filtering) Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-04-23 07:05

4. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows : Windows Vista [Filter]
Operating System : POSIX : Linux (Now Filtering)
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2010-04-01 17:54

5. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) (Now Filtering)
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
Operating System : POSIX : Linux (Now Filtering)
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Graphical Models [Filter]
Topic : Time Series [Filter]

Activity Percentile: 0.00

Registered: 2011-06-10 12:24

6. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux (Now Filtering)
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 10:01

7. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : POSIX : Linux (Now Filtering)
Programming Language : C/C\+\+ [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : High Performance Computing : Parallel Computing [Filter]

Activity Percentile: 0.00

Registered: 2009-11-20 16:56

8. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : POSIX : Linux (Now Filtering)
Programming Language : C/C\+\+ [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]

Activity Percentile: 0.00

Registered: 2016-02-18 15:57

9. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : POSIX : Linux (Now Filtering)
Programming Language : Perl [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00

Registered: 2013-11-21 21:46