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0. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function.

Development Status : 4 - Beta [Filter]
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Natural Language : German [Filter]
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Programming Language : R [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Multivariate Statistics [Filter]
Topic : Spatial Data & Statistics [Filter]

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Registered: 2017-08-30 21:22

1. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.

Development Status : 4 - Beta [Filter]
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Natural Language : French [Filter]
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Programming Language : Fortran [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Population Genetics [Filter]

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Registered: 2009-07-30 17:27

2. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
Development Status : 3 - Alpha [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter]	Activity Percentile: 0.00 Registered: 2011-12-05 20:42

3. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions.

Development Status : 5 - Production/Stable [Filter]
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Registered: 2009-11-20 16:56

4. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven.

Development Status : 4 - Beta [Filter]
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Topic : Numerical Analysis : Prob\. Methods, Simulation and Stochastic Differential Equations [Filter]
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Registered: 2011-11-29 13:02

5. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press.

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Registered: 2011-02-18 14:08

6. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates

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Registered: 2011-09-14 03:27

7. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details.

Development Status : 4 - Beta [Filter]
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Registered: 2009-11-30 09:36

8. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>

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Registered: 2009-06-05 00:29

9. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area. See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details.
Environment : Console (Text Based) [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : POSIX : Linux [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter]	Activity Percentile: 0.00 Registered: 2010-04-23 07:05

10. HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : Artistic License [Filter] Natural Language : English [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter] Topic : Biostatistics & Medical Statistics [Filter]	Activity Percentile: 0.00 Registered: 2012-10-16 20:41

11. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures

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Registered: 2009-04-17 15:10

12. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
Development Status : 1 - Planning [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter] Topic : Multivariate Statistics [Filter]	Activity Percentile: 0.00 Registered: 2011-03-07 18:54

13. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.

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Registered: 2010-03-05 10:51

14. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data Unification of different output formats Quality Control to find problematic reactions Normalisation of data
Development Status : 2 - Pre-Alpha [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter] Topic : Bioinformatics : Visualization [Filter]	Activity Percentile: 0.00 Registered: 2008-10-09 17:22

15. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.

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Registered: 2012-06-13 23:35

16. GenABEL - A suite of packages for statistical genomics
Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter] Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]	Registered: 2009-08-12 17:07

17. cvrcalc - A Cardiovascular Risk's Calculator by Scores

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Topic : Biostatistics & Medical Statistics [Filter]

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Registered: 2013-08-02 12:18

18. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

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Topic : Bioinformatics : Statistics [Filter]
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

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Registered: 2009-02-18 10:01

19. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included.

Development Status : 3 - Alpha [Filter]
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Registered: 2010-09-06 17:05

51 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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