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Topic > Bioinformatics

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53 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.

Development Status : 4 - Beta [Filter]
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Registered: 2010-09-03 21:34

1. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.

Development Status : 4 - Beta [Filter]
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Registered: 2012-08-10 08:48

2. CRImage - CRImage is a package to process and analyze biological images.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter] Topic : Biostatistics & Medical Statistics [Filter]	Activity Percentile: 0.00 Registered: 2010-06-27 11:26

3. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter] Topic : Biostatistics & Medical Statistics [Filter]	Activity Percentile: 0.00 Registered: 2010-06-28 19:28

4. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.

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Registered: 2011-09-26 05:04

5. OrgMassSpecR: Organic Mass Spectrometry - Organic/biological mass spectrometry data analysis. The development version of OrgMassSpecR is on GitHub (https://github.com/OrgMassSpec) and the stable version is on CRAN (https://cran.r-project.org/). The R-Forge repository is an archive.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : BSD License [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter] Topic : Chemoinformatics [Filter]	Activity Percentile: 0.00 Registered: 2009-04-28 20:04

6. Model-Based Network Analysis - Model-based solutions for network analysis. In particular, probabilistic tools for investigating context-specific activation patterns and network topology.

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Registered: 2010-06-14 20:56

7. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.

Development Status : 5 - Production/Stable [Filter]
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Registered: 2011-08-19 15:59

8. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules. Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages.

Development Status : 5 - Production/Stable [Filter]
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Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]

Registered: 2010-05-14 17:19

9. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI.

Development Status : 3 - Alpha [Filter]
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Registered: 2010-01-18 10:18

10. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.

Development Status : 3 - Alpha [Filter]
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Registered: 2008-07-23 21:21

11. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS). Packages in this project: PSCBS.
Development Status : 3 - Alpha [Filter] Development Status : 4 - Beta [Filter] Intended Audience : Developers [Filter] Intended Audience : End Users/Desktop (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter] Topic : Genetics [Filter]	Activity Percentile: 0.00 Registered: 2009-10-20 01:21

12. NameNeedle - Using Needleman-Wunsch to Match Sample Names
Development Status : 5 - Production/Stable [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter] Topic : Text [Filter]	Activity Percentile: 0.00 Registered: 2014-02-03 16:21

13. picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R
Development Status : 5 - Production/Stable [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter] Topic : Genetics : Phylogenetics [Filter] Topic : Multivariate Statistics [Filter]	Activity Percentile: 0.00 Registered: 2008-01-16 22:15

14. DNA Microarray Datasets - Bioconductor offers GEOquery and ArrayExpress for accessing DNA microarray data in GEO and ArrayExpress. It also offers microarray data packages. This project is an additional container of microarray data packages for depositors who prefer to use R-forge.
Development Status : 1 - Planning [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter] Natural Language : English [Filter] Operating System : Microsoft : Windows : Windows Vista [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter] Topic : Datasets [Filter]	Activity Percentile: 0.00 Registered: 2010-02-09 15:03

15. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.

Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2010-01-08 10:31

16. SBML Model Package - A collection of SBML Models with some experimental and simulated datasets.
Development Status : 4 - Beta [Filter] Environment : Console (Text Based) [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter]	Activity Percentile: 0.00 Registered: 2009-12-15 12:39

17. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis

Development Status : 5 - Production/Stable [Filter]
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Registered: 2014-01-22 14:22

18. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments
Development Status : 3 - Alpha [Filter] Intended Audience : Developers [Filter] Intended Audience : End Users/Desktop (Now Filtering) Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter] Topic : Biostatistics & Medical Statistics [Filter] Topic : Genetics [Filter]	Activity Percentile: 0.00 Registered: 2012-04-18 14:21

19. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
Development Status : 2 - Pre-Alpha [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : POSIX : Linux [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter] Topic : Genetics [Filter]	Activity Percentile: 0.00 Registered: 2011-08-17 20:46

53 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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