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Topic > Genetics > Population Genetics

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12 projects in result set.

0. AFLP - A package for the normalisation on classification of AFLP (Amplification Fragment Length Polymorphism) data.
Development Status : 4 - Beta [Filter] Environment : Console (Text Based) [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Genetics : Population Genetics [Filter]	Activity Percentile: 0.00 Registered: 2011-03-02 11:24

1. related - Genetic relatedness in R - An R package that allows users to estimate pairwise relatedness of individuals based on codominant molecular markers, and also has simulation functions for comparing the performance of different estimators and for testing the resolution of a data set.

Development Status : 5 - Production/Stable [Filter]
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License : Public Domain [Filter]
Natural Language : English [Filter]
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Programming Language : Fortran [Filter]
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Topic : Genetics : Population Genetics [Filter]

Activity Percentile: 0.00

Registered: 2014-04-09 08:33

2. OriGen - This package implements methods for spatial ancestry described in the paper "Fast Spatial Ancestry via Flexible Allele Frequency Surfaces" published in Bioinformatics 2014.
Development Status : 5 - Production/Stable [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : Fortran [Filter] Programming Language : R (Now Filtering) Topic : Genetics : Population Genetics [Filter]	Activity Percentile: 0.00 Registered: 2014-08-26 19:51

3. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.

Development Status : 4 - Beta [Filter]
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Natural Language : English [Filter]
Natural Language : French [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : Fortran [Filter]
Programming Language : R (Now Filtering)
Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Population Genetics [Filter]

Activity Percentile: 0.00

Registered: 2009-07-30 17:27

4. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures

Development Status : 4 - Beta [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Population Genetics [Filter]

Activity Percentile: 0.00

Registered: 2009-04-17 15:10

5. Individual-based metapopulation model - This package provides functions to run an individual-based metapopulation model, which includes genetic dynamics of diploid individuals, and flexibly defined life-histories.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R (Now Filtering)
Topic : Genetics : Population Genetics [Filter]
Topic : Other/Nonlisted Topic [Filter]

Activity Percentile: 0.00

Registered: 2012-07-18 10:30

6. phrapl - Note: development of phrapl has moved to GitHub: https://github.com/bomeara/phrapl

Development Status : 3 - Alpha [Filter]
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Programming Language : R (Now Filtering)
Topic : Genetics : Phylogenetics [Filter]
Topic : Genetics : Population Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-06-14 14:51

7. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis.

Development Status : 5 - Production/Stable [Filter]
Intended Audience : Developers [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
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Operating System : Microsoft : Windows [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
Topic : Genetics : Population Genetics [Filter]

Activity Percentile: 0.00

Registered: 2020-04-25 19:28

8. The adegenet package - The package adegenet is devoted to the multivariate analysis of genetic markers data.

Development Status : 4 - Beta [Filter]
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Natural Language : English [Filter]
Natural Language : French [Filter]
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Topic : Genetics : Population Genetics [Filter]
Topic : Multivariate Statistics [Filter]
Topic : Spatial Data & Statistics [Filter]

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Registered: 2008-01-06 17:38

9. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Population Genetics [Filter]

Registered: 2012-06-13 23:35

10. AcceptABEL - A package for controlling false-positives rate (FPR) in GWAS studies. The control is achieved via assessing marker-specific genomic inflation factor.

Development Status : 4 - Beta [Filter]
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License : Public Domain [Filter]
Natural Language : English [Filter]
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Topic : Bioinformatics : Mathematics [Filter]
Topic : Genetics : Multiple Testing [Filter]
Topic : Genetics : Population Genetics [Filter]

Activity Percentile: 0.00

Registered: 2013-02-26 08:43

11. parallelstructure - Package to provide a R framework to make use of multi-core computers when running analysis in the population genetics software STRUCTURE.

Development Status : 4 - Beta [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
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Programming Language : R (Now Filtering)
Topic : Genetics : Population Genetics [Filter]
Topic : High Performance Computing : Parallel Computing [Filter]

Activity Percentile: 0.00

Registered: 2013-03-26 16:28