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 Topic > Genetics
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22 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Statistical analysis of DNA mixtures - Statistical analysis of mixed traces of DNA with artefacts. Features include parameter-fitting, visual diagnostics, evaluation of the likelihood, and genotype prediction. Full functionality requires a licenced copy of Hugin (www.hugin.com).
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- Development Status : 4 - Beta [Filter]
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Registered: 2013-07-07 18:26 |
1. umx: A helper library for SEM in OpenMx - umx provides functions making it easy to build, run, modify, and report the results of Structural Equation Models (SEM) using OpenMx. Examples include setting start values: umxStart(); labels: umxLabel(); and reporting; umxSummary().
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- Topic : Optimization : General Purpose Continuous Solvers [Filter]
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Registered: 2013-08-28 13:52 |
2. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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Registered: 2011-08-19 15:59 |
3. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.
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Registered: 2010-01-08 16:59 |
4. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs.
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Registered: 2011-03-23 10:20 |
5. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments
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Registered: 2012-04-18 14:21 |
6. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
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Registered: 2010-01-08 10:31 |
7. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/
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Registered: 2009-05-19 20:01 |
8. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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Registered: 2013-05-29 18:34 |
9. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS.
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Registered: 2009-10-20 01:21 |
10. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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Registered: 2011-08-17 20:46 |
11. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates
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Registered: 2011-09-14 03:27 |
12. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.
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Registered: 2016-04-21 23:06 |
13. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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Registered: 2008-07-28 09:03 |
14. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.
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- Topic : Bioinformatics : Visualization [Filter]
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- Topic : Graphics : Plotting [Filter]
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Registered: 2009-06-19 09:14 |
15. Non-Additive Inverses - A package to construct Non-Additive Genetic relatedness matrices and their generalized inverses for inclusion in quantitative genetic analyses using the 'animal model'.
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- Programming Language : Fortran [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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- Topic : Multivariate Statistics : Linear Models [Filter]
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Registered: 2011-11-10 03:57 |
16. CNVScope - CNVScope: Visually exploring copy number aberrations in
cancer genomes
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Registered: 2019-07-16 15:34 |
17. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.
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Registered: 2011-01-07 17:53 |
18. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
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Registered: 2011-02-02 00:51 |
19. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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Registered: 2010-03-05 10:51 |
22 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
