Software Map
Project Tree
Now limiting view to projects in the following categories:
Intended Audience :: End Users/Desktop [Remove This Filter]
Programming Language :: R [Remove This Filter]
Environment :: Console (Text Based) [Remove This Filter]
81 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
0. colorspace: Computing with Colorspaces - Functions for computing coordinate conversions between colorspaces. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Graphics : Colors [Filter]
|
Activity Percentile: 90.00
Registered: 2007-02-15 19:23 |
1. sandwich: Robust Covariance Estimation - An object-oriented implementation of model-robust covariances and standard error estimators for cross-sectional, time series, and longitudinal data. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Econometrics [Filter]
- Topic : Regression Models [Filter]
- Topic : Robust Statistics [Filter]
|
Activity Percentile: 70.00
Registered: 2016-09-21 08:36 |
2. Dynamic Time Warp - Comprehensive implementation of Dynamic Time Warping algorithms in R. Supports arbitrary local (eg symmetric, asymmetric, slope-limited) and global (windowing) constraints, fast native code, several plot styles, and more. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Machine Learning [Filter]
- Topic : Time Series [Filter]
|
Registered: 2007-11-29 18:01 |
3. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Environment : X11 Applications [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-08 16:59 |
4. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2011-04-19 11:00 |
5. Multivariate Projection Methods - mpm is an R package by Paul Lewi and Luc Wouters for exploratory multivariate analysis of large data matrices, such as gene expression data from microarray experiments. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
- Topic : Multivariate Statistics : Correspondence Analysis [Filter]
- Topic : Multivariate Statistics : Projection Methods [Filter]
|
Activity Percentile: 0.00
Registered: 2008-01-29 14:46 |
6. dcr - Data Cloning in R - Data cloning (DC) uses Bayesian MCMC to make maximum likelihood inference of complex hierarchical models. The bundle includes basic infrastructure for DC with parallel computing support, and more specialized packages for ecology. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bayesian Statistics [Filter]
- Topic : Optimization [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2009-08-17 16:25 |
7. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-02-18 14:08 |
8. lsmeans - Calculate adjusted means and standard errors for main factors and interaction terms of lm, gls, lme and lme4 models. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : Public Domain [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R (Now Filtering)
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
- Topic : Genetics : Multiple Testing [Filter]
- Topic : Multivariate Statistics : Linear Models [Filter]
|
Activity Percentile: 0.00
Registered: 2009-09-10 11:49 |
9. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD. |
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Environment : X11 Applications [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : Other/Proprietary License [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Computational Physics [Filter]
- Topic : Connectivity [Filter]
- Topic : High Performance Computing : Large Memory [Filter]
|
Registered: 2009-06-17 16:54 |
10. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Environment : X11 Applications [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Graphical Models [Filter]
- Topic : Time Series [Filter]
|
Activity Percentile: 0.00
Registered: 2011-06-10 12:24 |
11. Regression Modeling Strategies - Regression modeling, testing, estimation, validation, graphics, prediction, and typesetting by storing enhanced model design attributes in the fit. rms is a collection of 229 functions that assist with and streamline modeling. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Graphics : Applications [Filter]
- Topic : Regression Models [Filter]
|
Activity Percentile: 0.00
Registered: 2010-11-22 19:09 |
12. GRASP - GRASP is a general method for making spatial predictions of response variables using point surveys of the response and spatial coverage of predictors. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2008-10-09 21:19 |
13. Activated Region Fitting - Activated Region Fitting (ARF) is a program for functional Magnetic Resonance Imaging (fMRI) data analysis. ARF uses Gaussian shape spatial models to parameterize active brain regions. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Other/Nonlisted Topic [Filter]
|
Activity Percentile: 0.00
Registered: 2008-09-18 11:23 |
14. betareg: Beta Regression - Beta regression for modeling beta-distributed dependent variables, e.g., rates and proportions. Maximum likelihood regression, finite mixture models, and recursive partitioning for beta regressions are provided. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Econometrics : Further Regression Models [Filter]
- Topic : Regression Models [Filter]
- Topic : Social Sciences : Other Regression Models [Filter]
|
Activity Percentile: 0.00
Registered: 2011-09-23 08:18 |
15. Estimation and Model Checking for GLSM - This package mainly deals with generalized linear spatial models for estimation, model checking and prediction by using MCMC algorithms. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Environment : X11 Applications [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Spatial Data & Statistics : Geostatistics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-08-17 10:52 |
16. ADEA - Data Envelopment Analysis (DEA) seeks to compare the relative efficiency of a group's decision units (DMU).
This package provides additional features to support variable selection, restricted DEA models, and leverage analysis.
The selection of variables in DEA is a cornerstone, because efficiency results hardly depend on that selection. A measured, called load, allows handling that selection. In the package to do it two step-by-step functions are provided.
Sometimes the reasons for external analysis require that the contributions of variables to the DEA be restricted in a range. Another function is also provided for this purpose.
Another feature provided allows us to find which DMUs cause the most significant changes in the results so that we can handle them properly.
|
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : Spanish [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Optimization : Mathematical Programming : Linear Programming [Filter]
- Topic : Other/Nonlisted Topic [Filter]
|
Activity Percentile: 0.00
Registered: 2021-08-04 10:52 |
17. Soil water - The project has now moved to GitHub: https://github.com/julienmoeys/soilwater |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R (Now Filtering)
- Topic : Environmetrics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-08-17 21:13 |
18. The Soil Texture Wizard - The project has now moved to GitHub: https://github.com/julienmoeys/soiltexture |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R (Now Filtering)
- Topic : Environmetrics [Filter]
- Topic : Graphics : Plotting [Filter]
|
Activity Percentile: 0.00
Registered: 2010-04-08 12:28 |
19. ctv: CRAN Task Views - Server-side and client-side tools for task views to CRAN-style repositories. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Other/Nonlisted Topic [Filter]
|
Activity Percentile: 0.00
Registered: 2007-06-08 16:40 |
81 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>