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34 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.
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Registered: 2010-01-08 16:59 |
1. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
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Registered: 2012-08-10 08:48 |
2. Species Abundance Distributions - Tools to fit and compare models of species abundance distribution using likelihood-based methods
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Registered: 2011-01-24 12:50 |
3. CNVScope - CNVScope: Visually exploring copy number aberrations in
cancer genomes
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Registered: 2019-07-16 15:34 |
4. cameratraps - Process and manage camera traps data: images, videos, no database, no fuss.
Images and videos are stored on a filesystem, NAS hardware is cheap.
The package takes care of cataloguing and carrying out basic analysis.
Loosely inspored by Rovero and Zimmerman (2016)
https://doi.org/10.1002/jwmg.21293
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Registered: 2019-08-08 11:35 |
5. Extremal Dependence - Extremal Dependence package provides parametric and nonparametric statistical methods for modelling and estimating the dependence of extreme values
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- Topic : Multivariate Statistics : Modelling Non-Gaussian Data [Filter]
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Registered: 2014-12-02 11:09 |
6. Parallel computations in R - This package uses and extends parallel infrastructure available in R and provides various applications in HPC.
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Registered: 2007-01-28 18:20 |
7. Forecasting with Artificial Intelligence - The package ForAI uses machine learning methods such as artificial neural networks, support vector regression, extreme learning machines, and evolutionary algorithms for forecasting and prediction.
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Registered: 2012-01-22 07:45 |
8. rmodest - Rmodest is a package that will allow you to easily fit mortality functions to your survival data, and to test hypotheses about your data.
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Registered: 2008-04-24 04:24 |
9. toyRpkg - A toy R package demonstrating features of R packaging. Plus, some useful functions would be included.
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Registered: 2011-11-11 21:14 |
10. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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Registered: 2013-05-29 18:34 |
11. SynergizeR - This package provides programmatic access to The Synergizer service for translating between sets of biological identifiers.
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Registered: 2011-11-04 17:46 |
12. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.
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Registered: 2010-10-20 17:09 |
13. Harmony - This package is a natural language processing (NLP) library that allows users to access large language models and use them to compare datasets where variable names are in unstructured text form. The target users are often academic researchers in the social sciences, such as psychology/mental health. We are actively recruiting contributors. We have an existing Python library also.
The source code is at: https://github.com/harmonydata/harmony_r
The web front-end of the tool is at: https://harmonydata.ac.uk/
What does Harmony do?
* Psychologists and social scientists often have to match items in different questionnaires, such as "I often feel anxious" and "Feeling nervous, anxious or afraid".
* This is called harmonisation.
* Harmonisation is a time consuming and subjective process.
* Going through long PDFs of questionnaires and putting the questions into Excel is no fun.
* Enter Harmony, a tool that uses natural language processing and generative AI models to help researchers harmonise questionnaire items, even in different languages.
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Registered: 2025-02-13 10:40 |
14. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.
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Registered: 2011-01-07 17:53 |
15. Bayesian Estimation and Model Checking - This package mainly deals with generalized linear spatial models in Bayesian way for estimation, prediction and model checking.
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Registered: 2011-08-18 03:20 |
16. The Soil Texture Wizard - The project has now moved to GitHub: https://github.com/julienmoeys/soiltexture
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Registered: 2010-04-08 12:28 |
17. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.
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Registered: 2009-06-19 09:14 |
18. Soil water - The project has now moved to GitHub: https://github.com/julienmoeys/soilwater
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Registered: 2010-08-17 21:13 |
19. Easy database interface - Simple database interface for SQLite, MySQL and MS Access. It provides functions for easily reading, writing, listing and subsetting tables in SQLite, MySQL and MS Access. easydb is build on top of RSQLite and RODBC.
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Registered: 2011-08-19 09:26 |
34 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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