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 Topic > Biostatistics & Medical Statistics
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27 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests.
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Registered: 2011-10-07 17:59 |
1. immunoassay - The purpose of this project is to allow fine-tuning of sigmoidal models beyond the limits of instrument software; and to provide functions for batch processing of output files and creation of reports with nice graphics.
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Registered: 2011-03-17 12:58 |
2. Intaclass Correlation Coefficient - The package provides functions to assist in the estimation of the Intraclass Correlation Coefficient (ICC) under different experimental designs. The goal is to provide tools when making parameter estimates of the ICC.
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Registered: 2011-02-02 05:33 |
3. FFD - Freedom From Disease - The project provides tools for two-stage surveys to substantiate freedom from disease using imperfect diagnostic tests. Risk based sampling and a graphical user interface (GUI) are implemented.
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Registered: 2010-07-15 14:07 |
4. Meta-Analysis of Diagnostic Accuracy - The mada package (Meta-Analysis of Diagnostic Accuracy) provides model fitting functions for diagnostic accuracy data. This includes the bivariate model of Reitsma et al. (2005) which is equivalent to the HSROC by Rutter&Gatsonis (2001).
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Registered: 2012-01-25 11:07 |
5. twKinresp - Fitting kinetic models to microbial respiration data.
April 2019: Package twKinresp has been moved to github:
https://github.com/bgctw/twKinresp
April 2018: Package twNlme has been moved to github:
https://github.com/bgctw/twNlme/
The package versions here are kept for history, but are outdated.
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Registered: 2010-09-15 16:23 |
6. CRImage - CRImage is a package to process and analyze biological images.
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Registered: 2010-06-27 11:26 |
7. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
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Registered: 2010-06-28 19:28 |
8. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI.
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Registered: 2010-01-18 10:18 |
9. Physical activity with accelerometers - The package pawacc collects functions to read, process and store accelerometer files. Models supported: Actigraph GT1M, GT3X and ActiSleep.
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Registered: 2012-09-03 15:45 |
10. Statistical methods for visual fields - a collection of tools for analyzing the field of vision. It provides a framework for development and use of innovative methods for visualisation, statistical analysis, and clinical interpretation of visual field loss and its change over time
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Registered: 2011-10-14 00:24 |
11. HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data.
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Registered: 2012-10-16 20:41 |
12. Causal Effects Sensitivity Analysis - Graphical Sensitivity Analysis for Assessing Surrogate Endpoints via Causal Inference
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Registered: 2013-02-22 01:18 |
13. flexsurv: Flexible survival models - The "flexsurv" package for flexible parametric survival models, including splines, generalized gamma / F, and extensible to user-defined models. This site contains versions up to 0.3.1 - development is now on github.com/chjackson/flexsurv-dev
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Registered: 2013-04-04 11:25 |
14. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>
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Registered: 2009-06-05 00:29 |
15. DICOM: Import DICOM data via R - The DICOM package is a small collection of R functions to import binary data files (e.g., MRI, CT, PET, etc.) that conform to the DICOM Data Standard.
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Registered: 2009-05-29 21:29 |
16. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
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Registered: 2013-11-21 21:46 |
17. lethal - Compute lethal doses for count data based on generalized additive models (GAMs) together with parametric bootstrap confidence intervals for the lethal dose.
For a current development version see https://github.com/hofnerb/lethal
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Registered: 2014-02-28 13:11 |
18. qualV - Qualitative Validation Criteria - Package qualV provides quantitative and qualitative criteria to compare models with data and to measure similarity of patterns. Specific attention is payed to problems with systematic differences and time shifts.
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Registered: 2008-02-28 15:45 |
19. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.
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Registered: 2010-05-06 10:59 |
27 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
