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42 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. modEvA - modEvA is an R package for species distribution model evaluation and analysis.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 57.14
Registered: 2014-04-04 11:51 |
1. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
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Registered: 2011-03-07 18:54 |
2. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2016-02-18 15:57 |
3. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
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Registered: 2015-07-04 09:37 |
4. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data
Unification of different output formats
Quality Control to find problematic reactions
Normalisation of data
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Registered: 2008-10-09 17:22 |
5. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates
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Registered: 2011-09-14 03:27 |
6. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.
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Registered: 2011-06-10 12:24 |
7. ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt.
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Registered: 2008-08-21 11:49 |
8. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included.
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
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Registered: 2010-09-06 17:05 |
9. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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Registered: 2010-03-05 10:51 |
10. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation.
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Registered: 2010-10-26 14:24 |
11. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject
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Registered: 2010-10-09 02:03 |
12. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven.
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Registered: 2011-11-29 13:02 |
13. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
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Registered: 2011-12-05 20:42 |
14. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis.
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Registered: 2020-04-25 19:28 |
15. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
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Registered: 2008-07-24 04:32 |
16. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.
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Registered: 2010-04-01 17:54 |
17. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.
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Registered: 2010-05-14 17:13 |
18. IsoGeneGUI - A graphical user interface package to conduct a dose-response analysis of microarray
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Registered: 2009-11-04 09:16 |
19. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details.
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Registered: 2010-04-23 07:05 |
42 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
