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0. R/exams: Automatic Generation of Exams - One-for-all exams generator. Exercises: Single-choice, multiple-choice, arithmetic, string, combinations thereof (cloze). Input formats: LaTeX, Markdown. Output formats: PDF, HTML, Docx, Moodle XML, QTI 1.2, QTI 2.1, Blackboard, OLAT, Ilias, ARSnova, ...

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Registered: 2012-02-12 00:43

1. dcr - Data Cloning in R - Data cloning (DC) uses Bayesian MCMC to make maximum likelihood inference of complex hierarchical models. The bundle includes basic infrastructure for DC with parallel computing support, and more specialized packages for ecology.

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Registered: 2009-08-17 16:25

2. doSMP - The doSMP package provides a parallel backend to the foreach package's %dopar% operator, allowing parallel operation on a symmetric multiprocessor workstation.

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Registered: 2010-11-19 22:27

3. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.

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Registered: 2010-10-20 17:09

4. doSNOW - The doSNOW package provides a parallel backend to the foreach package's %dopar% operator that provides parallel computation via R's snow package.

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Registered: 2010-11-19 22:28

5. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.

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Registered: 2010-01-08 16:59

6. lsmeans - Calculate adjusted means and standard errors for main factors and interaction terms of lm, gls, lme and lme4 models.

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Registered: 2009-09-10 11:49

7. Estimation and Model Checking for GLSM - This package mainly deals with generalized linear spatial models for estimation, model checking and prediction by using MCMC algorithms.

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Registered: 2011-08-17 10:52

8. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal. Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.

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Registered: 2010-05-14 17:13

9. Soil water - The project has now moved to GitHub: https://github.com/julienmoeys/soilwater

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Registered: 2010-08-17 21:13

10. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.

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Registered: 2009-06-19 09:14

11. The Soil Texture Wizard - The project has now moved to GitHub: https://github.com/julienmoeys/soiltexture

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Registered: 2010-04-08 12:28

12. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations

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Registered: 2011-02-02 00:51

13. Functional diversity - The "Functional diversity" project is based on the FD package, which can compute different multidimensional FD indices. It also contains other useful tools for functional ecology, e.g. trait-based community assembly via maximum entropy models.

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Registered: 2009-06-30 15:23

14. RHugin - R interface and API for the HUGIN Decision Engine.

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Registered: 2008-07-08 10:13

15. Dependency modeling toolbox - Model-based tools for the discovery and analysis of statistical dependencies between data sources.

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Registered: 2010-04-08 11:22

16. Activated Region Fitting - Activated Region Fitting (ARF) is a program for functional Magnetic Resonance Imaging (fMRI) data analysis. ARF uses Gaussian shape spatial models to parameterize active brain regions.

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Registered: 2008-09-18 11:23

17. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions.

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Registered: 2009-11-20 16:56

18. trip -- animal tracking data - The development of trip package is now hosted on GitHub, https://github.com/mdsumner/trip MDSumner 2013-07-04 Location estimation, track and spatial analysis for animal tag data.

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Registered: 2010-06-24 02:07

19. Structure-Time Diagram - The STdiag package is designed to provide efficient tools to simply plot a structure-time diagram to represent dynamics of a structured time series.

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Registered: 2012-10-25 13:03

38 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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