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104 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Eagle for Genome-Wide Association Mappin - The Eagle package is an implementation of multiple-locus association mapping on a genome-wide scale. It can handle inbred or outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. |
- Development Status : 1 - Planning [Filter]
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- Programming Language : R [Filter]
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
- Topic : Genetics : QTL Mapping [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
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Registered: 2017-07-24 00:36 |
1. rgl: 3D visualization support - rgl development has moved to Github.
rgl is a 3D visualization system based on OpenGL. It provides a medium to high level interface for use in R, currently modelled on classic R graphics, with extensions to allow for interaction. |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Graphics : Dynamic Graphics [Filter]
- Topic : Graphics : Graphics Systems [Filter]
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Registered: 2008-08-16 13:50 |
2. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Graphical Models [Filter]
- Topic : Time Series [Filter]
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Registered: 2011-06-10 12:24 |
3. BayesSurv - This package estimates mortality with covariates from capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots. |
- Development Status : 3 - Alpha [Filter]
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- Programming Language : R [Filter]
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
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Registered: 2011-06-08 10:38 |
4. Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model. |
- Development Status : 4 - Beta [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2012-07-03 03:50 |
5. R/GNU Linear Programming Kit Interface - GLPK is an open source software for solving large-scale linear programming (LP), mixed integer linear programming (MILP) and other related problems. Rglpk provides a high level interface to R for solving LP/MILP problems. |
- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : German [Filter]
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- Programming Language : R [Filter]
- Topic : Optimization : Mathematical Programming : Boolean Programming [Filter]
- Topic : Optimization : Mathematical Programming : Integer Programming [Filter]
- Topic : Optimization : Mathematical Programming : Linear Programming [Filter]
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Registered: 2007-11-27 09:48 |
6. parallelstructure - Package to provide a R framework to make use of multi-core computers when running analysis in the population genetics software STRUCTURE. |
- Development Status : 4 - Beta [Filter]
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- Programming Language : R [Filter]
- Topic : Genetics : Population Genetics [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
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Registered: 2013-03-26 16:28 |
7. ZooImage - ZooImage is a software (based on R and ImageJ) to analyze plankton samples, using image analysis and machine learning techniques. This is the old repository, please, look at https://github.com/SciViews/zooimage for latest version! |
- Development Status : 5 - Production/Stable [Filter]
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- Programming Language : Java [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Machine Learning [Filter]
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Registered: 2009-02-18 14:57 |
8. Variant Pattern Analyzer - VPA (Variant Pattern Analyzer) is an R package for prioritizing variants with user-specified frequency pattern from multiple study subjects in next generation sequencing study. |
- Development Status : 4 - Beta [Filter]
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Registered: 2011-08-05 14:30 |
9. Summarizing Data with Graphs - Summarizing Data with Graphs |
- Development Status : 2 - Pre-Alpha [Filter]
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- Topic : Graphical Models [Filter]
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Registered: 2009-01-19 07:50 |
10. calibFit - This package provides curve fitting, visualization, and calibration methods for the development, validation, and use of biological and chemical assays. The functionality includes heteroscedasticity, model selection, and measures of assay quality. |
- Development Status : 6 - Mature [Filter]
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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- Topic : Regression Models [Filter]
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Registered: 2011-10-25 17:59 |
11. Nonlinear regression analysis - Data sets from Bates and Watts (1988) "Nonlinear Regression Analysis and Its Applications" plus lattice-based graphics for nonlinear regression models, including parameter inference regions. |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Datasets [Filter]
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Registered: 2007-06-01 15:07 |
12. crop - The package crop provides an interface to system tools (on Unix-like operating systems) to crop graphics. |
- Development Status : 4 - Beta [Filter]
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- Programming Language : R [Filter]
- Programming Language : Unix Shell [Filter]
- Topic : Graphics : Devices [Filter]
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Registered: 2015-10-18 18:40 |
13. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs. |
- Development Status : 4 - Beta [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics : QTL Mapping [Filter]
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Registered: 2009-10-07 19:54 |
14. Extreme Values in R (evir) - Extreme Value in R: Functions for extreme value theory, which may be divided into the following groups; exploratory data analysis, block maxima, peaks over thresholds (univariate and bivariate), point processes, gev/gpd distributions. |
- Development Status : 4 - Beta [Filter]
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- Topic : Econometrics : Time Series Modelling [Filter]
- Topic : Finance : Risk Management [Filter]
- Topic : Time Series [Filter]
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Registered: 2011-03-21 13:20 |
15. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares. |
- Development Status : 4 - Beta [Filter]
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Registered: 2012-07-12 22:01 |
16. Instrument Limit of Detection Modeling - Limit of Detection (LOD) reflects an (medical diagnostic) instrument's level of sensitivity. We develop the LOD model selection and estimation tools with application to medical diagnostic instruments. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2011-11-14 17:17 |
17. BaSTA - This package estimates mortality with covariates from capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots. |
- Development Status : 3 - Alpha [Filter]
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
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Registered: 2011-07-11 13:52 |
18. NeuroSpatCo - The package is used to search for patterns of organization in human prefrontal cortex of both horizontal (cell body) and vertical plane (minicolumns). |
- Development Status : 5 - Production/Stable [Filter]
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- Programming Language : Tcl [Filter]
- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
- Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
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Registered: 2011-05-10 20:54 |
19. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence. |
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Registered: 2016-04-21 23:06 |
104 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>