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11 projects in result set.
0. SPecies' LImits by Threshold Statistics - splits contains tools for delimiting species and automated taxonomy at many levels of biological organization (eg. DNA barcoding, morphometrics), top-down (merging phylogenetic and phylogeographic methods) and bottom-up (single samples into >1 groups). Newer versions of the package via the Project Home Page link below.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2009-01-15 14:06 |
1. paleoPhylo - 'paleoPhylo' will contain tools to assess how speciation, extinction & character change contribute to biodiversity. Currently it features graphical tools to draw phylogenies with time axes and ancestors that persist after speciation.
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- Development Status : 4 - Beta [Filter]
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Registered: 2008-10-07 12:38 |
2. phrapl - Note: development of phrapl has moved to GitHub: https://github.com/bomeara/phrapl
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- Development Status : 3 - Alpha [Filter]
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2011-06-14 14:51 |
3. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2008-07-17 03:57 |
4. caper - Comparative Analysis package - The Comparative Analyses of Phylogenetics and Evolution in R (caper) package implements a range of methods for the comparative analysis of taxa including methods based on phylogenetic independent contrasts and phylogenetically corrected linear models.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Regression Models [Filter]
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Registered: 2011-01-14 11:43 |
5. PhyloOrchard - This holds noteworthy chronograms. It serves as the tree store for the DateLife.org project but is available for anyone to use.
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Registered: 2011-09-17 01:58 |
6. adephylo - The package 'adephylo' implements multivariate approaches for comparative data, i.e. data including one phylogeny and one or several traits.
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Registered: 2008-11-18 15:35 |
7. Analysis of Independent Contrasts - The CAIC package provides methods for the comparative analysis of taxa using independent contrasts methods. It reimplements the methods of the CAIC and MacroCAIC programs will implement alternative methods such as those provided in LDAP.
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Registered: 2008-01-31 15:29 |
8. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees.
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Registered: 2008-11-07 19:39 |
9. phylobase - Defining the basic S4 classes and methods for representing and manipulating phylogenetic trees and data in R.
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Registered: 2007-12-14 19:17 |
10. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2008-07-23 21:21 |
