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26 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD.

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Registered: 2009-06-17 16:54

1. memisc

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Registered: 2013-02-08 10:55

2. Conditional Random Fields - This project provides a set of tools for conditional random fields tasks such as decoding/inference/sampling/training.

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Registered: 2010-12-28 07:13

3. Rcplex - Interface to the CPLEX optimization engine. Supports Linux and Windows.

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Registered: 2008-08-04 05:27

4. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.

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Registered: 2011-09-26 05:04

5. move: analyze animal movement data - move is a package that contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyse animal movement data. Move addresses movement ecological questions.

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Registered: 2012-03-28 07:52

6. splinesurv - A package containing utilities for nonparametric Bayesian analysis of clustered survival data. The baseline hazard function and frailty density are modeled using penalized B-splines. Regression and spline parameters are estimated via MCMC.

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Registered: 2008-01-08 16:50

7. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.

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Registered: 2010-05-06 10:59

8. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

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Registered: 2010-04-01 17:54

9. spatial copula - This package has moved to: https://github.com/bengraeler/spcopula

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Registered: 2011-03-21 17:39

10. Markov decision processes (MDPs) in R - Create and optimize MDPs with discrete time steps and state space. Both normal MDPs and hierarchical MDPs can be considered.

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Registered: 2009-06-08 12:06

11. Profile Dirichlet Process Mixtures - This package facilitates profile inference for a class of product partition models (PPM). The Dirichlet process mixture is a specific case in this class. These methods search for the maximum posterior (MAP) estimate for the cluster partition in the PPM.

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Registered: 2009-04-24 15:56

12. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

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Registered: 2011-10-11 08:51

13. libamtrack - This package is the R interface to the open-source, ANSI C library libamtrack (http://libamtrack.dkfz.org). It provides computational routines for research in proton and ion beam therapy.

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Registered: 2014-06-28 12:14

14. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp

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Registered: 2013-05-29 18:34

15. Models for Data from Unmarked Animals - This is a stub. Development now continues at http://github.com/ianfiske/unmarked. unmarked analyzes wildlife data arising from many popular wildlife sampling techniques using 2-stage hierarchical models.

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Registered: 2007-07-25 14:05

16. Bayesian Estimation and Model Checking - This package mainly deals with generalized linear spatial models in Bayesian way for estimation, prediction and model checking.

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Registered: 2011-08-18 03:20

17. Earth Mover Distance - EarthMovDist implements the Earth Movers distance in R.

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Registered: 2009-02-17 06:53

18. WMCapacity - The WMCapacity project implements hierarchical Bayesian models of working memory capacity, including Cowan's (2001) and Pashler's (1988) multinomial tree models. An SPSS-like GUI is provided for model building and MCMC setup.

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Registered: 2009-09-25 14:45

19. Composite Likelihood for Random Fields - Composite-Likelihood based methods for Random Fields.

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Registered: 2010-02-08 16:57

26 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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