Software Map
Project Tree
Now limiting view to projects in the following categories:
Intended Audience :: End Users/Desktop [Remove This Filter]
Operating System :: POSIX :: Linux [Remove This Filter]
Development Status :: 5 - Production/Stable [Remove This Filter]
Intended Audience :: Developers [Remove This Filter]
37 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
0. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Database [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2016-04-01 13:46 |
1. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD.
|
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : Other/Proprietary License [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Computational Physics [Filter]
- Topic : Connectivity [Filter]
- Topic : High Performance Computing : Large Memory [Filter]
|
Registered: 2009-06-17 16:54 |
2. addendum - Utility functions that should have been in R: easy glmnet, pretty graphing and swift debugging and profiling.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Other Environment [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Machine Learning : Model Selection and Validation [Filter]
- Topic : Multivariate Statistics : Missing Data [Filter]
- Topic : Regression Models [Filter]
|
Activity Percentile: 0.00
Registered: 2011-06-17 13:35 |
3. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Environment : Web Environment [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : PHP [Filter]
- Programming Language : R [Filter]
- Programming Language : Unix Shell [Filter]
- Topic : Bioinformatics : Visualization [Filter]
- Topic : Genetics [Filter]
- Topic : Graphics : Plotting [Filter]
|
Registered: 2009-06-19 09:14 |
4. Extremal Dependence - Extremal Dependence package provides parametric and nonparametric statistical methods for modelling and estimating the dependence of extreme values
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Multivariate Statistics : Modelling Non-Gaussian Data [Filter]
- Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]
- Topic : Spatial Data & Statistics : Geostatistics [Filter]
|
Activity Percentile: 0.00
Registered: 2014-12-02 11:09 |
5. BradleyTerry2 - BradleyTerry2 provides facilities to specify, fit and evaluate Bradley-Terry models for pairwise comparisons. Models may incorporate object-specific, subject-specific, or contest-specific variables, as well as random effects.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Regression Models [Filter]
- Topic : Social Sciences : Linear and Generalized Linear Models [Filter]
|
Activity Percentile: 0.00
Registered: 2010-04-28 10:52 |
6. Yield Curve - Yield curve is modelled by the methodologies of Nelson-Siegel and Svensson. The crucial point is to estimate the coefficients in linear way, according to approach of Diebol and Li.
The package also includes the term structure of Fed and ECB.
|
- Development Status : 3 - Alpha [Filter]
- Development Status : 5 - Production/Stable (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
|
Activity Percentile: 0.00
Registered: 2009-07-26 15:06 |
7. speedR - speedR:An R-package for interactive GUI-based data import, filtering and complex ready-to-use code generation to speed up your productivity. speedR recognizes fi le formats like Excel (.xls and .xlsx), open office calc, .csv and .txt fi les automatically.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : German [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : Java [Filter]
- Programming Language : R [Filter]
- Topic : Connectivity [Filter]
- Topic : Graphical User Interface [Filter]
- Topic : Software Development : Code Generators [Filter]
|
Activity Percentile: 0.00
Registered: 2010-10-29 08:48 |
8. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Datasets [Filter]
|
Activity Percentile: 0.00
Registered: 2014-01-22 14:22 |
9. foreach - The foreach package provides support for the foreach looping construct. Foreach is an idiom that allows for iterating over elements in a collection, without the use of an explicit loop counter.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Other Environment [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : Other/Proprietary License [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
|
Activity Percentile: 0.00
Registered: 2010-11-18 22:18 |
10. CNVScope - CNVScope: Visually exploring copy number aberrations in
cancer genomes
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Environment : Web Environment [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : BSD License [Filter]
- License : Other/Proprietary License [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
- Operating System : Other OS [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics : Visualization [Filter]
- Topic : Genetics [Filter]
- Topic : High Performance Computing [Filter]
|
Activity Percentile: 0.00
Registered: 2019-07-16 15:34 |
11. data management R Tools - The "dmRTools" package is collection of functions can be used in a clinical trials data management system.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Operating System : POSIX : SunOS/Solaris [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Visualization [Filter]
|
Activity Percentile: 0.00
Registered: 2011-10-10 21:38 |
12. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : Java [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
- Topic : Social Sciences [Filter]
|
Activity Percentile: 0.00
Registered: 2011-08-19 15:59 |
13. doSMP - The doSMP package provides a parallel backend to the foreach package's %dopar% operator, allowing parallel operation on a symmetric multiprocessor workstation.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : High Performance Computing [Filter]
|
Activity Percentile: 0.00
Registered: 2010-11-19 22:27 |
14. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : Russian [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : Java [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
|
Activity Percentile: 0.00
Registered: 2010-10-20 17:09 |
15. Modelling Peaks Over Threshold - The project consists in developing functions for peaks over threshold modeling. Most of results come from the extreme value theory (EVT). The EVT is currently extensively used, mostly in environmental sciences and finance.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : French [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Finance : Risk Management : Value at Risk [Filter]
- Topic : Other/Nonlisted Topic [Filter]
|
Activity Percentile: 0.00
Registered: 2007-09-21 14:29 |
16. Optimal Two-stage Phase II Design - This R package creates the optimal two-stage phase II designs with long-term endpoint.
A later expanded version of the package (OptInterim) can be downloaded on CRAN
http://cran.r-project.org/web/packages/OptInterim/index.html
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Environment : Web Environment [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Optimization [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2008-12-14 01:13 |
17. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.
|
- Development Status : 1 - Planning [Filter]
- Development Status : 5 - Production/Stable (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : System Administrators [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Bioinformatics : Visualization [Filter]
|
Activity Percentile: 0.00
Registered: 2008-07-24 04:32 |
18. doSNOW - The doSNOW package provides a parallel backend to the foreach package's %dopar% operator that provides parallel computation via R's snow package.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
|
Activity Percentile: 0.00
Registered: 2010-11-19 22:28 |
19. arules - Mining Association Rules - Infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules).
arules is now maintained on Github: https://github.com/mhahsler/arules
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Machine Learning [Filter]
|
Registered: 2007-05-21 13:55 |
37 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
