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Topic > Bioinformatics > Statistics

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13 projects in result set.

0. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>

Development Status : 4 - Beta [Filter]
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Programming Language : R [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00

Registered: 2009-06-05 00:29

1. GenABEL - A suite of packages for statistical genomics
Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : C/C\+\+ (Now Filtering) Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter] Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]	Registered: 2009-08-12 17:07

2. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : High Performance Computing : Parallel Computing [Filter]

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Registered: 2009-11-20 16:56

3. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures

Development Status : 4 - Beta [Filter]
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Natural Language : French [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Population Genetics [Filter]

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Registered: 2009-04-17 15:10

4. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.

Development Status : 3 - Alpha [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]

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Registered: 2016-02-18 15:57

5. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function.

Development Status : 4 - Beta [Filter]
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Natural Language : German [Filter]
Operating System : Microsoft : Windows [Filter]
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Programming Language : R [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Multivariate Statistics [Filter]
Topic : Spatial Data & Statistics [Filter]

Activity Percentile: 0.00

Registered: 2017-08-30 21:22

6. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
Development Status : 1 - Planning [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : C/C\+\+ (Now Filtering) Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter] Topic : Multivariate Statistics [Filter]	Activity Percentile: 0.00 Registered: 2011-03-07 18:54

7. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press.

Development Status : 5 - Production/Stable [Filter]
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Natural Language : English [Filter]
Operating System : OS Independent [Filter]
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Programming Language : R [Filter]
Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Bioinformatics : Statistics [Filter]

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Registered: 2011-02-18 14:08

8. pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
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Natural Language : English [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Multiple Testing [Filter]
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00

Registered: 2010-03-21 02:01

9. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

Development Status : 4 - Beta [Filter]
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Programming Language : R [Filter]
Topic : Bayesian Statistics [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-10-11 08:51

10. GWASBinTests - Bin-based analysis of genome-wide association studies Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute p-values (and FDRs) of several association tests.

Development Status : 4 - Beta [Filter]
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Natural Language : French [Filter]
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Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00

Registered: 2011-10-07 17:59

11. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 10:01

12. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2010-04-01 17:54