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212 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>
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- Development Status : 4 - Beta [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2009-06-05 00:29 |
1. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2012-11-27 16:58 |
2. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Topic : Bioinformatics [Filter]
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
3. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD.
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- Development Status : 4 - Beta [Filter]
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- Topic : Computational Physics [Filter]
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- Topic : High Performance Computing : Large Memory [Filter]
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Registered: 2009-06-17 16:54 |
4. lme4 - Mixed-effects models - An R package for fitting and analyzing linear, nonlinear and generalized linear mixed models.
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Regression Models [Filter]
- Topic : Social Sciences : Linear and Generalized Linear Models [Filter]
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Registered: 2007-08-17 17:27 |
5. niftir - Read and write neuroimaging (nifti) data files into native R data structures (array and big matrices). Also includes functions for the mining of brain connectivity data, including conducting Connectome-Wide Association Studies (CWAS).
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- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2010-12-16 06:17 |
6. shp2graph - This project provides functions to convert a "spatial" object of a road network to a "graph-class" or "igraph-class" object, which makes "igraph", "graph" and "RBGL" available for analysing it.
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- Topic : Spatial Data & Statistics : Classes for Spatial Data [Filter]
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Registered: 2011-01-12 17:41 |
7. Protocol for Adjust & Select Models - This project is about modeling species abundances in communities.
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- Development Status : 1 - Planning [Filter]
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Registered: 2011-01-18 16:54 |
8. Composite Likelihood for Random Fields - Composite-Likelihood based methods for Random Fields.
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- Development Status : 4 - Beta [Filter]
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- Topic : Environmetrics [Filter]
- Topic : Multivariate Statistics : Multivariate Distributions [Filter]
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Registered: 2010-02-08 16:57 |
9. RFITSIO - A fairly complete set of wrap functions to the CFITSIO library (http://heasarc.gsfc.nasa.gov/fitsio/fitsio.html) for reading/writing FITS files.
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- Development Status : 2 - Pre-Alpha [Filter]
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- Topic : Database : R Interfaces [Filter]
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Registered: 2011-01-26 14:30 |
10. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.
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- Development Status : 3 - Alpha [Filter]
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- Topic : Bayesian Statistics [Filter]
- Topic : Genetics [Filter]
- Topic : Graphical Models [Filter]
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Registered: 2011-01-07 17:53 |
11. doSMP - The doSMP package provides a parallel backend to the foreach package's %dopar% operator, allowing parallel operation on a symmetric multiprocessor workstation.
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2010-11-19 22:27 |
12. vegan - Community Ecology Package - 'vegan' is a CRAN package for the analysis of ecological communities. It has tools for analysing ecological diversity, and for the multivariate analysis of communities (NMDS, pCCA, pRDA etc.) - Development on R-Forge discontinued, go to https://github.com/vegandevs/
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2007-09-05 13:59 |
13. nloptr - an R interface to NLopt - nloptr provides an R interface to NLopt, a free/open-source library for nonlinear optimization providing a common interface to a number of different optimization routines which can handle nonlinear constraints and lower and upper bounds for the controls.
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- Topic : Optimization : General Purpose Continuous Solvers [Filter]
- Topic : Optimization : Mathematical Programming : Nonlinear Programming [Filter]
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Registered: 2010-10-30 18:59 |
14. Gradient forest - Detecting biological composition patterns along environmental gradients from site-by-species ecological data. Package gradientForest calculates the gradients from split-point importances provided by auxiliary package extendedForest, based on randomForest.
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2011-01-06 08:05 |
15. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
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- Development Status : 1 - Planning [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Multivariate Statistics [Filter]
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Registered: 2011-03-07 18:54 |
16. Yasomi: Self-Organising Map in R - Yasomi is Yet Another Self-Organising Map Implementation. It provides an implementation of Kohonen's SOM, with extension to kernel variants and comprehensive visualisation capabilities.
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- Natural Language : French [Filter]
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- Topic : Cluster Analysis [Filter]
- Topic : Machine Learning : Neural Networks [Filter]
- Topic : Multivariate Statistics : Unsupervised Classification [Filter]
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Registered: 2011-02-25 12:40 |
17. partykit: Recursive Partytioning Toolkit - Infrastructure for representing, summarizing, and visualizing tree-structured models. It can be used for constructing or reading tree models from different sources (rpart, RWeka, PMML), sharing
functionality for print/plot/predict methods.
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- Topic : Machine Learning : Recursive Partitioning [Filter]
- Topic : Regression Models [Filter]
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Registered: 2008-09-30 11:39 |
18. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs.
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Registered: 2011-03-23 10:20 |
19. ipoptr - an R interface to Ipopt - ipoptr provides an R interface to Ipopt (Interior Point OPTimizer), a software package to solve general nonlinear programming problems with nonlinear constraints and lower and upper bounds for the controls.
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Registered: 2010-08-23 20:33 |
212 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
