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Topic > Genetics

Linkage, LD and Haplotype Mapping (8 project)
Multiple Testing (4 project)
Phylogenetics (20 project)
Population Genetics (12 project)
QTL Mapping (3 project)

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9 projects in result set.

0. RFLPtools - RFLPtools provides functions to analyse DNA fragment samples (i.e. derived from RFLP-analysis) and standalone BLAST report files (i.e. DNA sequence analysis).

Development Status : 4 - Beta [Filter]
Intended Audience : Developers [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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Natural Language : German [Filter]
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Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2010-02-24 09:24

1. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
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Programming Language : Fortran [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics [Filter]
Topic : Genetics [Filter]
Topic : Graphical Models [Filter]

Activity Percentile: 0.00

Registered: 2011-01-07 17:53

2. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples. Currently hosted packages: csSAM and CellMix packages.

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Topic : Bioinformatics [Filter]
Topic : Genetics [Filter]
Topic : Software Development [Filter]

Activity Percentile: 0.00

Registered: 2013-04-11 08:27

3. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.

Development Status : 5 - Production/Stable [Filter]
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Natural Language : French [Filter]
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Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Database : R Interfaces [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2008-07-28 09:03

4. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
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Topic : Bioinformatics : Medical Science [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-03-23 10:20

5. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.
Environment : Console (Text Based) [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Operating System : MacOS [Filter] Operating System : POSIX : Linux [Filter] Programming Language : C/C\+\+ (Now Filtering) Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter] Topic : Genetics [Filter]	Activity Percentile: 0.00 Registered: 2013-12-19 15:12

6. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp

Development Status : 4 - Beta [Filter]
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Topic : Bioinformatics [Filter]
Topic : Genetics [Filter]
Topic : High Performance Computing [Filter]

Activity Percentile: 0.00

Registered: 2013-05-29 18:34

7. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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Programming Language : R [Filter]
Topic : Bayesian Statistics [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-10-11 08:51

8. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.

Development Status : 4 - Beta [Filter]
Environment : Other Environment [Filter]
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Natural Language : English (Now Filtering)
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Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2009-09-17 00:13