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30 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.
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Registered: 2009-09-17 00:13 |
1. gsDesign: Group Sequential Design - Generates group sequential designs using alpha- and beta-spending functions or Wang-Tsiatis (e.g., O'Brien-Fleming and Pocock) boundary families. Many plotting capabilities as well as non-binding futility rules are available. Easily extended.
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Registered: 2008-08-31 13:07 |
2. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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Registered: 2011-09-26 05:04 |
3. R interface to GEOS - The package provides tools for interfacing the C++ translation of the Java Topology Suite (GEOS from JTS).
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Registered: 2009-11-11 10:55 |
4. Nonparametrics for Clustered Binary Data - CorrBin implements nonparametric methods for analysing exchangeable binary and multinomial data with variable cluster sizes with emphasis on trend testing.
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Registered: 2008-10-02 19:05 |
5. Markov decision processes (MDPs) in R - Create and optimize MDPs with discrete time steps and state space. Both normal MDPs and hierarchical MDPs can be considered.
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Registered: 2009-06-08 12:06 |
6. adephylo - The package 'adephylo' implements multivariate approaches for comparative data, i.e. data including one phylogeny and one or several traits.
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Registered: 2008-11-18 15:35 |
7. Regression Models for Ordinal Data - This project hosts the R-package 'ordinal'. The ordinal R-package implements likelihood based models for ordinal (ordered categorical) data based on cumulative probabilities in the framework of cumulative link (mixed) models.
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Registered: 2010-06-12 18:24 |
8. rvgtest - Test non-uniform RVG - Tools for visualizing and testing defects in non-uniform random variate generators (RVG).
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Registered: 2009-10-09 09:57 |
9. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.
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Registered: 2011-10-11 08:51 |
10. Conditional Random Fields - This project provides a set of tools for conditional random fields tasks such as decoding/inference/sampling/training.
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Registered: 2010-12-28 07:13 |
11. Gradient forest - Detecting biological composition patterns along environmental gradients from site-by-species ecological data. Package gradientForest calculates the gradients from split-point importances provided by auxiliary package extendedForest, based on randomForest.
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2011-01-06 08:05 |
12. Earth Mover Distance - EarthMovDist implements the Earth Movers distance in R.
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Registered: 2009-02-17 06:53 |
13. Clustering using convex fusion penalties - An R/C++ implementation of the clusterpath algorithm described in Hocking et al. 2011, for robust convex clustering using sparsity-inducing fusion penalties.
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Registered: 2011-05-09 12:56 |
14. Models for Data from Unmarked Animals - This is a stub. Development now continues at http://github.com/ianfiske/unmarked.
unmarked analyzes wildlife data arising from many popular wildlife sampling techniques using 2-stage hierarchical models.
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Registered: 2007-07-25 14:05 |
15. Profile Dirichlet Process Mixtures - This package facilitates profile inference for a class of product partition models (PPM). The Dirichlet process mixture is a specific case in this class. These methods search for the maximum posterior (MAP) estimate for the cluster partition in the PPM.
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Registered: 2009-04-24 15:56 |
16. splinesurv - A package containing utilities for nonparametric Bayesian analysis of clustered survival data. The baseline hazard function and frailty density are modeled using penalized B-splines. Regression and spline parameters are estimated via MCMC.
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Registered: 2008-01-08 16:50 |
17. Multiple Cue Probability Learning - mcplR offers a flexible (S4) framework to investigate multiple cue probability learning (MCPL). mcplR incorporates a number of learning models (Rescorla-Wagner, GCM, ALCOVE, etc) in a general state-space framework, where new models can be easily added.
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Registered: 2007-09-07 14:37 |
18. WMCapacity - The WMCapacity project implements hierarchical Bayesian models of working memory capacity, including Cowan's (2001) and Pashler's (1988) multinomial tree models. An SPSS-like GUI is provided for model building and MCMC setup.
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Registered: 2009-09-25 14:45 |
19. Hyper-g Priors for GAM selection - This R-package implements objective Bayesian model selection with penalised splines, using a so-called hyper-g prior for the parameters in the generalised additive model.
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Registered: 2011-08-11 09:12 |
30 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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