Software Map
Project Tree
Now limiting view to projects in the following categories:
Programming Language :: C/C++ [Remove This Filter]
Intended Audience :: End Users/Desktop [Remove This Filter]
Topic :: Bioinformatics [Remove This Filter]
11 projects in result set.
0. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages.
|
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2013-04-11 08:27 |
1. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution.
|
- Development Status : 1 - Planning [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Other/Nonlisted Topic [Filter]
|
Activity Percentile: 0.00
Registered: 2007-12-05 06:24 |
2. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
|
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Programming Language : Tcl [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-11-20 09:49 |
3. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
|
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2011-09-26 05:04 |
4. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
|
Registered: 2012-11-27 16:51 |
5. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
|
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Programming Language : Tcl [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Software Development [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2008-02-20 20:34 |
6. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Database [Filter]
|
Activity Percentile: 0.00
Registered: 2014-05-31 04:36 |
7. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
- Topic : Time Series [Filter]
|
Registered: 2012-11-27 16:58 |
8. Model-Based Network Analysis - Model-based solutions for network analysis. In particular, probabilistic tools for investigating context-specific activation patterns and network topology.
|
- Development Status : 1 - Planning [Filter]
- Environment : Other Environment [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : Other/Proprietary License [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Machine Learning [Filter]
- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
|
Activity Percentile: 0.00
Registered: 2010-06-14 20:56 |
9. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.
|
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Marketing & Business Analytics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-05-06 10:59 |
10. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-07 14:13 |
