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43 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Clustering using convex fusion penalties - An R/C++ implementation of the clusterpath algorithm described in Hocking et al. 2011, for robust convex clustering using sparsity-inducing fusion penalties.
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- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
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Registered: 2011-05-09 12:56 |
1. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.
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Registered: 2011-10-11 08:51 |
2. Markov decision processes (MDPs) in R - Create and optimize MDPs with discrete time steps and state space. Both normal MDPs and hierarchical MDPs can be considered.
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Registered: 2009-06-08 12:06 |
3. Bayesian Estimation and Model Checking - This package mainly deals with generalized linear spatial models in Bayesian way for estimation, prediction and model checking.
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- Topic : Spatial Data & Statistics : Geostatistics [Filter]
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Registered: 2011-08-18 03:20 |
4. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.
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Registered: 2009-09-17 00:13 |
5. waveslim: Wavelet methods for 1/2/3D - Basic wavelet routines for the processing/analysis/inference of time series, images and 3D arrays. The code provided here is based on Percival and Walden (2000); Gencay, Selcuk and Whitcher (2001); Kingsbury (1999); and Selesnick (200?).
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Registered: 2009-02-26 17:20 |
6. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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Registered: 2011-09-26 05:04 |
7. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>
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Registered: 2009-06-05 00:29 |
8. Linear quantile mixed models - This project is aimed at developing an R package to fit and analyse quantile regression models with random effects.
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Registered: 2012-05-15 16:23 |
9. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD.
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- Topic : Computational Physics [Filter]
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- Topic : High Performance Computing : Large Memory [Filter]
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Registered: 2009-06-17 16:54 |
10. Species Distribution Modelling tools - THIS PROJECT HAS MOVED to http://rforge.net/SDMTools/ ... Provided will be a set of tools for processing the outcomes of species distribution models.
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2010-02-17 21:58 |
11. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-04-17 15:10 |
12. move: analyze animal movement data - move is a package that contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyse animal movement data. Move addresses movement ecological questions.
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
- Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
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Registered: 2012-03-28 07:52 |
13. R2jags - A package for running jags from R
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
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Registered: 2008-05-10 19:19 |
14. splinesurv - A package containing utilities for nonparametric Bayesian analysis of clustered survival data. The baseline hazard function and frailty density are modeled using penalized B-splines. Regression and spline parameters are estimated via MCMC.
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Registered: 2008-01-08 16:50 |
15. digest - 'hash' arbitrary R objects - The digest package provides functions for the creation of `hash'
digests of arbitrary R objects using the md5, sha-1 and crc32
algorithms permitting easy comparison of R language objects.
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Registered: 2008-03-01 16:25 |
16. netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data.
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Registered: 2014-11-28 09:55 |
17. rPithon: use Python over a 'pipe' - rPithon is based on rPython but instead of linking to the Python libraries, a Python program is started and is communicated with using a 'pipe'. This allows different R programs/packages to use different Python instances if desired.
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Registered: 2014-12-24 12:43 |
18. adephylo - The package 'adephylo' implements multivariate approaches for comparative data, i.e. data including one phylogeny and one or several traits.
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- Topic : Genetics : Phylogenetics [Filter]
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Registered: 2008-11-18 15:35 |
19. RInside - R inside C++ - RInside provides simple C++ classes that make it easy to embed R into your C++ applications.
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Registered: 2009-02-08 22:38 |
43 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
