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 Topic > Bioinformatics
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45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Programming Language : R [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
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Activity Percentile: 0.00
Registered: 2008-11-07 19:39 |
1. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : French [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-28 09:03 |
2. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2009-09-17 00:13 |
3. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
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- Topic : Chemoinformatics [Filter]
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Registered: 2011-05-13 20:48 |
4. RHRV - Package for carrying out heart rate variability studies of ECG records
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- Development Status : 6 - Mature [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Registered: 2010-10-14 10:22 |
5. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
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- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Other Environment [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Topic : Genetics : Phylogenetics [Filter]
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Registered: 2008-07-23 21:21 |
6. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Registered: 2011-09-26 05:04 |
7. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Registered: 2012-11-27 16:51 |
8. CRImage - CRImage is a package to process and analyze biological images.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2010-06-27 11:26 |
9. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution.
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- Development Status : 1 - Planning [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Registered: 2007-12-05 06:24 |
10. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : End Users/Desktop [Filter]
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- Programming Language : Tcl [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Multivariate Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2009-11-20 09:49 |
11. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Activity Percentile: 0.00
Registered: 2010-06-28 19:28 |
12. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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- Development Status : 5 - Production/Stable [Filter]
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- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Programming Language : Java [Filter]
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- Topic : Social Sciences [Filter]
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Activity Percentile: 0.00
Registered: 2011-08-19 15:59 |
13. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
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- Development Status : 2 - Pre-Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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Registered: 2010-01-08 10:31 |
14. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network.
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- Development Status : 6 - Mature [Filter]
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Activity Percentile: 0.00
Registered: 2014-10-23 15:21 |
15. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages.
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Activity Percentile: 0.00
Registered: 2013-04-11 08:27 |
16. Atlas and Analysis - Atlas and Analysis (A2) of pathways (curated)
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Activity Percentile: 0.00
Registered: 2018-01-19 16:21 |
17. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
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- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English [Filter]
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
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Activity Percentile: 0.00
Registered: 2010-01-07 14:13 |
18. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
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- Development Status : 2 - Pre-Alpha [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English [Filter]
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- Topic : Bioinformatics [Filter]
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2014-02-05 10:27 |
19. COXMEG - COXMEG provides a tool to fit a Cox mixed-effects model, incorporating fast algorithms for genome-wide association analysis.
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Activity Percentile: 0.00
Registered: 2019-08-02 18:19 |
45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
