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 Topic > Bioinformatics
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45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour.
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- Development Status : 3 - Alpha [Filter]
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Activity Percentile: 0.00
Registered: 2010-08-30 08:56 |
1. Model-Free Psychometric Functions - Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Regression Models [Filter]
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Registered: 2009-08-22 09:52 |
2. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm
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Registered: 2013-01-17 23:06 |
3. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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- Natural Language : French [Filter]
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Registered: 2008-07-28 09:03 |
4. Variant Pattern Analyzer - VPA (Variant Pattern Analyzer) is an R package for prioritizing variants with user-specified frequency pattern from multiple study subjects in next generation sequencing study.
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- Development Status : 4 - Beta [Filter]
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Registered: 2011-08-05 14:30 |
5. Classification of RNA Structure Change - R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data.
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- Development Status : 4 - Beta [Filter]
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- Topic : Machine Learning : Random Forests [Filter]
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Registered: 2015-09-02 17:28 |
6. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.
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- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : Russian [Filter]
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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Registered: 2010-10-20 17:09 |
7. netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data.
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- Development Status : 4 - Beta [Filter]
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Registered: 2014-11-28 09:55 |
8. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
9. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2014-01-22 14:22 |
10. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
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- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
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Registered: 2012-11-27 16:58 |
11. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
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- Development Status : 2 - Pre-Alpha [Filter]
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2014-02-05 10:27 |
12. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2011-08-17 20:46 |
13. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2016-04-21 23:06 |
14. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages.
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Registered: 2013-04-11 08:27 |
15. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
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- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2010-01-08 10:31 |
16. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
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Registered: 2010-01-07 14:13 |
17. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
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Registered: 2012-11-27 16:51 |
18. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution.
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- Development Status : 1 - Planning [Filter]
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Registered: 2007-12-05 06:24 |
19. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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Activity Percentile: 0.00
Registered: 2011-08-19 15:59 |
45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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