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48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
- Topic : Cluster Analysis : Model-based Clustering [Filter]
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Registered: 2010-04-01 17:54 |
1. plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments.
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
- Topic : Genetics [Filter]
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Registered: 2012-07-01 21:32 |
2. modEvA - modEvA is an R package for species distribution model evaluation and analysis.
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2014-04-04 11:51 |
3. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
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Registered: 2009-11-20 16:56 |
4. ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt.
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- Development Status : 3 - Alpha [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2008-08-21 11:49 |
5. pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation.
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- Development Status : 3 - Alpha [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics : Multiple Testing [Filter]
- Topic : Multivariate Statistics [Filter]
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Registered: 2010-03-21 02:01 |
6. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
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- Programming Language : Fortran [Filter]
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Registered: 2015-07-04 09:37 |
7. Peirce - Illustrate Peirces criterion for rejection of outliers from a normal distribution.
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Registered: 2012-09-07 07:56 |
8. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included.
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Mathematics [Filter]
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Registered: 2010-09-06 17:05 |
9. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details.
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Registered: 2010-04-23 07:05 |
10. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>
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Registered: 2009-06-05 00:29 |
11. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function.
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- Development Status : 4 - Beta [Filter]
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- Natural Language : German [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2017-08-30 21:22 |
12. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference
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Registered: 2007-12-03 15:58 |
13. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study.
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- Topic : Bioinformatics : Medical Science [Filter]
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- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2011-04-19 11:00 |
14. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Machine Learning : Regularized and Shrinkage Methods [Filter]
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Registered: 2010-05-14 17:13 |
15. IsoGeneGUI - A graphical user interface package to conduct a dose-response analysis of microarray
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Registered: 2009-11-04 09:16 |
16. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2016-02-18 15:57 |
17. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.
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- Natural Language : French [Filter]
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- Programming Language : Fortran [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-07-30 17:27 |
18. GenABEL - A suite of packages for statistical genomics
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Registered: 2009-08-12 17:07 |
19. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/
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Registered: 2016-10-08 19:20 |
48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
