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48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. IsoGeneGUI - A graphical user interface package to conduct a dose-response analysis of microarray
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2009-11-04 09:16 |
1. cvrcalc - A Cardiovascular Risk's Calculator by Scores
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- Topic : Bioinformatics : Medical Science [Filter]
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Registered: 2013-08-02 12:18 |
2. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis.
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2020-04-25 19:28 |
3. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Machine Learning : Regularized and Shrinkage Methods [Filter]
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Registered: 2010-05-14 17:13 |
4. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2016-02-18 15:57 |
5. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.
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- Development Status : 4 - Beta [Filter]
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- Natural Language : French [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Fortran [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-07-30 17:27 |
6. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.
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- Topic : Genetics : QTL Mapping [Filter]
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Registered: 2009-10-07 19:54 |
7. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included.
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Registered: 2010-09-06 17:05 |
8. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject
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Registered: 2010-10-09 02:03 |
9. The FEST package - Identification of Family Relations using linked markers.
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Registered: 2010-04-13 13:05 |
10. mixOmics - mixOmics is an R package that supplies different methodologies to unravel relationships between two heterogeneous data sets of size n × p and n × q where the p and q variables are measured on the same samples or individuals n.
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- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
- Topic : Multivariate Statistics : Projection Methods : Canonical Correlation [Filter]
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Registered: 2010-06-25 04:17 |
11. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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- Natural Language : German [Filter]
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Registered: 2010-03-05 10:51 |
12. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
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Registered: 2008-07-24 04:32 |
13. Gene set analysis with asymptotic pvalue - mGSZ is a gene set analysis method based on GSZ statistics (Törönen et al.,2009) and asymptotic p-value. mGSZ is different from the standard GSZ method in that it assigns asymptotic p-values to the gene set scores instead of empirical p-values.
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Registered: 2014-02-14 10:16 |
14. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Graphical Models [Filter]
- Topic : Time Series [Filter]
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Registered: 2011-06-10 12:24 |
15. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.
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Registered: 2012-07-12 22:01 |
16. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests.
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Registered: 2011-10-07 17:59 |
17. plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments.
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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Registered: 2012-07-01 21:32 |
18. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.
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Registered: 2011-10-11 08:51 |
19. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2012-06-13 23:35 |
48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
