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41 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented.
Development Status : 3 - Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering) Topic : Regression Models [Filter]	Activity Percentile: 0.00 Registered: 2013-07-05 08:44

1. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>

Development Status : 4 - Beta [Filter]
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Topic : Biostatistics & Medical Statistics [Filter]

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Registered: 2009-06-05 00:29

2. cvrcalc - A Cardiovascular Risk's Calculator by Scores

Development Status : 5 - Production/Stable [Filter]
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Topic : Biostatistics & Medical Statistics [Filter]

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Registered: 2013-08-02 12:18

3. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area. See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details.
Environment : Console (Text Based) [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : POSIX : Linux [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-04-23 07:05

4. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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Programming Language : Perl [Filter]
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Registered: 2013-11-21 21:46

5. GenABEL - A suite of packages for statistical genomics
Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering) Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]	Registered: 2009-08-12 17:07

6. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
Development Status : 3 - Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2011-12-05 20:42

7. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
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Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

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Registered: 2009-02-18 10:01

8. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.

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Registered: 2013-12-19 15:12

9. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.

Development Status : 4 - Beta [Filter]
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Natural Language : English [Filter]
Natural Language : French [Filter]
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Programming Language : Fortran [Filter]
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Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Population Genetics [Filter]

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Registered: 2009-07-30 17:27

10. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven.

Development Status : 4 - Beta [Filter]
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Registered: 2011-11-29 13:02

11. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary conservation.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-10-26 14:24

12. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data. http://groups.google.com/group/gadaproject
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-10-09 02:03

13. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.

Development Status : 4 - Beta [Filter]
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Natural Language : German [Filter]
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Registered: 2010-03-05 10:51

14. modEvA - modEvA is an R package for species distribution model evaluation and analysis.

Development Status : 4 - Beta [Filter]
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Topic : Spatial Data & Statistics : Ecological Analysis [Filter]

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Registered: 2014-04-04 11:51

15. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data Unification of different output formats Quality Control to find problematic reactions Normalisation of data
Development Status : 2 - Pre-Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering) Topic : Bioinformatics : Visualization [Filter]	Activity Percentile: 0.00 Registered: 2008-10-09 17:22

16. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis.

Development Status : 5 - Production/Stable [Filter]
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Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
Topic : Genetics : Population Genetics [Filter]

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Registered: 2020-04-25 19:28

17. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.

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Topic : Genetics : QTL Mapping [Filter]

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Registered: 2009-10-07 19:54

18. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates

Development Status : 5 - Production/Stable [Filter]
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Registered: 2011-09-14 03:27

19. mixOmics - mixOmics is an R package that supplies different methodologies to unravel relationships between two heterogeneous data sets of size n × p and n × q where the p and q variables are measured on the same samples or individuals n.

Development Status : 5 - Production/Stable [Filter]
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Topic : Multivariate Statistics : Projection Methods : Canonical Correlation [Filter]

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Registered: 2010-06-25 04:17

41 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>