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13 projects in result set.

0. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
Development Status : 2 - Pre-Alpha [Filter] Environment : Console (Text Based) [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics [Filter] Topic : Genetics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-01-08 10:31

1. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : German [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Genetics (Now Filtering)
Topic : High Performance Computing [Filter]

Activity Percentile: 0.00

Registered: 2013-05-29 18:34

2. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.
Environment : Console (Text Based) [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : MacOS [Filter] Operating System : POSIX : Linux [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter] Topic : Genetics (Now Filtering)	Activity Percentile: 0.00 Registered: 2013-12-19 15:12

3. umx: A helper library for SEM in OpenMx - umx provides functions making it easy to build, run, modify, and report the results of Structural Equation Models (SEM) using OpenMx. Examples include setting start values: umxStart(); labels: umxLabel(); and reporting; umxSummary().

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : Artistic License [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : BSD [Filter]
Programming Language : R [Filter]
Topic : Genetics (Now Filtering)
Topic : Multivariate Statistics [Filter]
Topic : Optimization : General Purpose Continuous Solvers [Filter]

Activity Percentile: 0.00

Registered: 2013-08-28 13:52

4. CNVScope - CNVScope: Visually exploring copy number aberrations in cancer genomes

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : Web Environment [Filter]
Environment : Win32 (MS Windows) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : BSD License [Filter]
License : Other/Proprietary License [Filter]
Natural Language : English [Filter]
Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
Operating System : Other OS [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics (Now Filtering)
Topic : High Performance Computing [Filter]

Activity Percentile: 0.00

Registered: 2019-07-16 15:34

5. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
Intended Audience : Other Audience [Filter]
License : OSI Approved : BSD License [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Genetics (Now Filtering)
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00

Registered: 2011-02-02 00:51

6. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics (Now Filtering)

Activity Percentile: 0.00

Registered: 2011-09-14 03:27

7. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics (Now Filtering)

Activity Percentile: 0.00

Registered: 2010-01-08 16:59

8. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : Fortran [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics [Filter]
Topic : Genetics (Now Filtering)
Topic : Graphical Models [Filter]

Activity Percentile: 0.00

Registered: 2011-01-07 17:53

9. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Medical Science [Filter]
Topic : Genetics (Now Filtering)

Activity Percentile: 0.00

Registered: 2011-03-23 10:20

10. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/

Development Status : 3 - Alpha [Filter]
Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : No Input/Output (Daemon) [Filter]
Environment : Web Environment [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
License : Other/Proprietary License [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Database [Filter]
Topic : Genetics (Now Filtering)

Activity Percentile: 0.00

Registered: 2009-05-19 20:01

11. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : Web Environment [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : PHP [Filter]
Programming Language : R [Filter]
Programming Language : Unix Shell [Filter]
Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics (Now Filtering)
Topic : Graphics : Plotting [Filter]

Registered: 2009-06-19 09:14

12. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics (Now Filtering)

Activity Percentile: 0.00

Registered: 2011-10-11 08:51