Software Map
Project Tree
Now limiting view to projects in the following categories:
Development Status :: 5 - Production/Stable [Remove This Filter]
Intended Audience :: Developers [Remove This Filter]
Environment :: Console (Text Based) [Remove This Filter]
46 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
0. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
|
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Environment : X11 Applications [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : BSD License [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-02-02 00:51 |
1. The Soil Texture Wizard - The project has now moved to GitHub: https://github.com/julienmoeys/soiltexture
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Environmetrics [Filter]
- Topic : Graphics : Plotting [Filter]
|
Activity Percentile: 0.00
Registered: 2010-04-08 12:28 |
2. Soil water - The project has now moved to GitHub: https://github.com/julienmoeys/soilwater
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Environmetrics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-08-17 21:13 |
3. Estimation and Model Checking for GLSM - This package mainly deals with generalized linear spatial models for estimation, model checking and prediction by using MCMC algorithms.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Environment : X11 Applications [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Spatial Data & Statistics : Geostatistics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-08-17 10:52 |
4. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
|
Activity Percentile: 0.00
Registered: 2009-11-20 16:56 |
5. lsmeans - Calculate adjusted means and standard errors for main factors and interaction terms of lm, gls, lme and lme4 models.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : Public Domain [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
- Topic : Genetics : Multiple Testing [Filter]
- Topic : Multivariate Statistics : Linear Models [Filter]
|
Activity Percentile: 0.00
Registered: 2009-09-10 11:49 |
6. R/exams: Automatic Generation of Exams - Hosting of the project has moved to https://codeberg.org/zeileis/exams
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Connectivity [Filter]
- Topic : Education [Filter]
- Topic : Text [Filter]
|
Activity Percentile: 0.00
Registered: 2012-02-12 00:43 |
7. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Environment : X11 Applications [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Visualization [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-08 16:59 |
8. Structure-Time Diagram - The STdiag package is designed to provide efficient tools to simply plot a structure-time diagram to represent dynamics of a structured time series.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Graphics : Plotting [Filter]
|
Activity Percentile: 0.00
Registered: 2012-10-25 13:03 |
9. dcr - Data Cloning in R - Data cloning (DC) uses Bayesian MCMC to make maximum likelihood inference of complex hierarchical models. The bundle includes basic infrastructure for DC with parallel computing support, and more specialized packages for ecology.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics [Filter]
- Topic : Optimization [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2009-08-17 16:25 |
10. Convert inline comments to documentation - Generates Rd files from comments in your R code, facilitating sustainable, accurate documentation and rapid package publication.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Software Development : Build Tools [Filter]
- Topic : Software Development : Code Generators [Filter]
- Topic : Text : Documentation [Filter]
|
Registered: 2009-07-29 12:37 |
11. scriptests - Support for using .Rt (transcript) tests
in the tests directory of a package. Provides more
convenience and features than the standard .R/.Rout.save
tests. Tests can be run under R CMD check and also
interactively.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2010-06-19 14:48 |
12. doSMP - The doSMP package provides a parallel backend to the foreach package's %dopar% operator, allowing parallel operation on a symmetric multiprocessor workstation.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : High Performance Computing [Filter]
|
Activity Percentile: 0.00
Registered: 2010-11-19 22:27 |
13. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : Russian [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Java [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
|
Activity Percentile: 0.00
Registered: 2010-10-20 17:09 |
14. survMisc - Extends the survival package with commonly used functions and plots focusing on the Cox model.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Datasets [Filter]
|
Activity Percentile: 0.00
Registered: 2013-03-27 17:58 |
15. doSNOW - The doSNOW package provides a parallel backend to the foreach package's %dopar% operator that provides parallel computation via R's snow package.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
|
Activity Percentile: 0.00
Registered: 2010-11-19 22:28 |
16. surveillance - The R package 'surveillance' implements statistical methods for the modeling and monitoring of time series of counts, proportions and categorical data, as well as for the modeling of continuous-time point processes of epidemic phenomena.
NOTE: As from September 2026, following the release of version 1.26.1, the R package 'surveillance' is maintained in a Git project at <https://codeberg.org/EE-hub/surveillance>.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Social Sciences : Analysis of Categorical and Count Data [Filter]
- Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
- Topic : Time Series [Filter]
|
Activity Percentile: 0.00
Registered: 2007-06-19 14:46 |
17. unit and system testing for R - rtest was a fork from RUnit. the author started it because he needed Hudson/Jenkins output from R and he did not manage to contact the developers of RUnit.
Status: unmantained.
Alternative: svUnit (SciVews).
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Environment : Web Environment [Filter]
- Intended Audience : Developers (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2010-09-21 08:01 |
18. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Machine Learning : Regularized and Shrinkage Methods [Filter]
|
Registered: 2010-05-14 17:13 |
19. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.
|
- Development Status : 5 - Production/Stable (Now Filtering)
- Environment : Console (Text Based) (Now Filtering)
- Environment : Web Environment [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : PHP [Filter]
- Programming Language : R [Filter]
- Programming Language : Unix Shell [Filter]
- Topic : Bioinformatics : Visualization [Filter]
- Topic : Genetics [Filter]
- Topic : Graphics : Plotting [Filter]
|
Registered: 2009-06-19 09:14 |
46 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
