Software Map

Project Tree

Project Tree

Now limiting view to projects in the following categories:
Development Status :: 5 - Production/Stable [Remove This Filter]
Environment :: Console (Text Based) [Remove This Filter]

Environment > X11 Applications

Gnome (2 project)
KDE (0 project)

Browse By:

11 projects in result set.

0. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.

Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Programming Language : Tcl [Filter]
Topic : Bioinformatics [Filter]
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00

Registered: 2009-11-20 09:49

1. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : Win32 (MS Windows) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Biostatistics & Medical Statistics [Filter]
Topic : Marketing & Business Analytics [Filter]

Activity Percentile: 0.00

Registered: 2010-05-06 10:59

2. vcd: Visualizing Categorical Data - The vcd project aims at further developing visualization methods suitable for categorical data using R.

Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : Win32 (MS Windows) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Graphics : Applications [Filter]
Topic : Graphics : Graphics Systems [Filter]
Topic : Graphics : Plotting [Filter]

Activity Percentile: 0.00

Registered: 2009-02-06 16:02

3. Multivariate Projection Methods - mpm is an R package by Paul Lewi and Luc Wouters for exploratory multivariate analysis of large data matrices, such as gene expression data from microarray experiments.

Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : Win32 (MS Windows) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Visualization [Filter]
Topic : Multivariate Statistics : Correspondence Analysis [Filter]
Topic : Multivariate Statistics : Projection Methods [Filter]

Activity Percentile: 0.00

Registered: 2008-01-29 14:46

4. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
Intended Audience : Other Audience [Filter]
License : OSI Approved : BSD License [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Genetics [Filter]
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00

Registered: 2011-02-02 00:51

5. Estimation and Model Checking for GLSM - This package mainly deals with generalized linear spatial models for estimation, model checking and prediction by using MCMC algorithms.

Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
Intended Audience : Other Audience [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Spatial Data & Statistics : Geostatistics [Filter]

Activity Percentile: 0.00

Registered: 2011-08-17 10:52

6. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.

Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Graphical Models [Filter]
Topic : Time Series [Filter]

Activity Percentile: 0.00

Registered: 2011-06-10 12:24

7. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.

Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2010-01-08 16:59

8. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.

Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : Win32 (MS Windows) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : Russian [Filter]
Operating System : Microsoft : Windows : Windows Vista [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : Java [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Design of Experiments & Analysis of Experimental Data [Filter]

Activity Percentile: 0.00

Registered: 2010-10-20 17:09

9. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD.

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : Other/Proprietary License [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Computational Physics [Filter]
Topic : Connectivity [Filter]
Topic : High Performance Computing : Large Memory [Filter]

Registered: 2009-06-17 16:54

10. Graphical Multiple Comparison Procedure - This package provides functions and a graphical user interface for graphical described multiple test procedures (sequentially rejective, Simes and parametric).

Development Status : 5 - Production/Stable (Now Filtering)
Environment : Console (Text Based) (Now Filtering)
Environment : Win32 (MS Windows) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : Java [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Medical Science [Filter]

Activity Percentile: 0.00

Registered: 2010-02-17 13:06