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47 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Modelling Peaks Over Threshold - The project consists in developing functions for peaks over threshold modeling. Most of results come from the extreme value theory (EVT). The EVT is currently extensively used, mostly in environmental sciences and finance. |
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- Topic : Finance : Risk Management : Value at Risk [Filter]
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Activity Percentile: 50.00
Registered: 2007-09-21 14:29 |
1. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis |
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Registered: 2014-01-22 14:22 |
2. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs. |
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Registered: 2011-03-23 10:20 |
3. ZooImage - ZooImage is a software (based on R and ImageJ) to analyze plankton samples, using image analysis and machine learning techniques. This is the old repository, please, look at https://github.com/SciViews/zooimage for latest version! |
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Registered: 2009-02-18 14:57 |
4. NeuroSpatCo - The package is used to search for patterns of organization in human prefrontal cortex of both horizontal (cell body) and vertical plane (minicolumns). |
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Registered: 2011-05-10 20:54 |
5. rgl: 3D visualization support - rgl development has moved to Github.
rgl is a 3D visualization system based on OpenGL. It provides a medium to high level interface for use in R, currently modelled on classic R graphics, with extensions to allow for interaction. |
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Registered: 2008-08-16 13:50 |
6. cvrcalc - A Cardiovascular Risk's Calculator by Scores |
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Registered: 2013-08-02 12:18 |
7. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files. |
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Registered: 2010-01-08 16:59 |
8. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters. |
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Registered: 2011-08-19 15:59 |
9. R package nlstools - The R package nlstools: a toolbox for nonlinear regression diagnostics |
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Registered: 2009-02-24 11:54 |
10. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments. |
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Registered: 2009-06-19 09:14 |
11. RXKCD - This package allows the visualization of your favorite XKCD comic strip directly from R |
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Registered: 2011-07-10 13:54 |
12. plm: linear models for panel data - A set of estimators and tests for panel data |
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- Topic : Econometrics : Further Regression Models [Filter]
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Registered: 2009-04-21 10:17 |
13. doSNOW - The doSNOW package provides a parallel backend to the foreach package's %dopar% operator that provides parallel computation via R's snow package. |
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- Topic : High Performance Computing : Parallel Computing [Filter]
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Registered: 2010-11-19 22:28 |
14. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data. |
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Registered: 2010-10-20 17:09 |
15. doSMP - The doSMP package provides a parallel backend to the foreach package's %dopar% operator, allowing parallel operation on a symmetric multiprocessor workstation. |
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Registered: 2010-11-19 22:27 |
16. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package. |
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- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
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Registered: 2009-02-18 10:01 |
17. Stereological Unfolding - Stereological unfolding estimates the joint size-shape-orientation distribution of spheroidal
shaped particles based on the same measured quantities of corresponding planar
vertical section profiles. |
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Registered: 2017-09-12 08:48 |
18. arules - Mining Association Rules - Infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules).
arules is now maintained on Github: https://github.com/mhahsler/arules
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Registered: 2007-05-21 13:55 |
19. Regression Modeling Strategies - Regression modeling, testing, estimation, validation, graphics, prediction, and typesetting by storing enhanced model design attributes in the fit. rms is a collection of 229 functions that assist with and streamline modeling. |
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Registered: 2010-11-22 19:09 |
47 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>