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38 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. linprog: Linear Programming/Optimization - This package can be used to solve Linear Programming / Linear optimization problems by using the simplex algorithm.
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Registered: 2009-12-25 16:29 |
1. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.
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Registered: 2011-10-11 08:51 |
2. MEET.5.1:Motif Element Estimation Tools - MEET 5.1 is an R-package that includes a set of models, aprox. 550, and tools for the detection of cis-regulatory sequences.
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Registered: 2011-08-10 14:27 |
3. Conditional Random Fields - This project provides a set of tools for conditional random fields tasks such as decoding/inference/sampling/training.
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Registered: 2010-12-28 07:13 |
4. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
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Registered: 2011-02-02 00:51 |
5. Mutoss - Mutoss (multiple hypotheses testing in an open software system) aims at providing a unified, extensible interface covering a large spectrum of multiple hypotheses testing procedures in R. Features a GUI and a simulation tool. Funded by PASCAL2.
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Registered: 2010-02-11 12:32 |
6. ordijuice - ordijuice is package for unconstrained ordination of vegetation data, running under JUICE software (http://www.sci.muni.cz/botany/juice/). Generally a wrapper for functions from package vegan, with some additional functions.
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Registered: 2009-02-18 08:49 |
7. memisc
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Registered: 2013-02-08 10:55 |
8. Harmony - This package is a natural language processing (NLP) library that allows users to access large language models and use them to compare datasets where variable names are in unstructured text form. The target users are often academic researchers in the social sciences, such as psychology/mental health. We are actively recruiting contributors. We have an existing Python library also.
The source code is at: https://github.com/harmonydata/harmony_r
The web front-end of the tool is at: https://harmonydata.ac.uk/
What does Harmony do?
* Psychologists and social scientists often have to match items in different questionnaires, such as "I often feel anxious" and "Feeling nervous, anxious or afraid".
* This is called harmonisation.
* Harmonisation is a time consuming and subjective process.
* Going through long PDFs of questionnaires and putting the questions into Excel is no fun.
* Enter Harmony, a tool that uses natural language processing and generative AI models to help researchers harmonise questionnaire items, even in different languages.
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Registered: 2025-02-13 10:40 |
9. Markov decision processes (MDPs) in R - Create and optimize MDPs with discrete time steps and state space. Both normal MDPs and hierarchical MDPs can be considered.
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Registered: 2009-06-08 12:06 |
10. TradeAnalytics - Transaction-oriented infrastructure for defining instruments, transactions, portfolios and accounts for trading systems and strategy simulation. Provides portfolio support for multi-asset class and multi-currency portfolios. Still in heavy development.
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Registered: 2008-12-09 03:28 |
11. Bayesian Estimation and Model Checking - This package mainly deals with generalized linear spatial models in Bayesian way for estimation, prediction and model checking.
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Registered: 2011-08-18 03:20 |
12. libamtrack - This package is the R interface to the open-source, ANSI C library libamtrack (http://libamtrack.dkfz.org). It provides computational routines for research in proton and ion beam therapy.
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- Topic : Computational Physics [Filter]
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Registered: 2014-06-28 12:14 |
13. simsalabim - This package currently implements Singular System/Spectrum Analysis (SSA) and Phase Synchronisation Indices.
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- Topic : Econometrics : Time Series Modelling [Filter]
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Registered: 2008-10-03 08:07 |
14. frontier: Stochastic Frontier Analysis - Maximum Likelihood Estimation of Stochastic Frontier Production and Cost Functions. Two specifications are available: the error components model (Battese and Coelli, 1992) and the efficiency effects model (Battese and Coelli, 1995).
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- Topic : Econometrics : Further Regression Models [Filter]
- Topic : Econometrics : Microeconometrics [Filter]
- Topic : Regression Models [Filter]
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Registered: 2008-10-19 20:27 |
15. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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Registered: 2013-05-29 18:34 |
16. Easy database interface - Simple database interface for SQLite, MySQL and MS Access. It provides functions for easily reading, writing, listing and subsetting tables in SQLite, MySQL and MS Access. easydb is build on top of RSQLite and RODBC.
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Registered: 2011-08-19 09:26 |
17. waveslim: Wavelet methods for 1/2/3D - Basic wavelet routines for the processing/analysis/inference of time series, images and 3D arrays. The code provided here is based on Percival and Walden (2000); Gencay, Selcuk and Whitcher (2001); Kingsbury (1999); and Selesnick (200?).
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Registered: 2009-02-26 17:20 |
18. partykit: Recursive Partytioning Toolkit - Infrastructure for representing, summarizing, and visualizing tree-structured models. It can be used for constructing or reading tree models from different sources (rpart, RWeka, PMML), sharing
functionality for print/plot/predict methods.
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- Topic : Machine Learning : Recursive Partitioning [Filter]
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Registered: 2008-09-30 11:39 |
19. spatial copula - This package has moved to: https://github.com/bengraeler/spcopula
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- Topic : Multivariate Statistics : Modelling Non-Gaussian Data [Filter]
- Topic : Multivariate Statistics : Multivariate Distributions : Copulae [Filter]
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Registered: 2011-03-21 17:39 |
38 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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