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ANOVA Artificial Neural Network Bayesian Bioinformatics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GDAL GUI Genetic Algorithms Genetics Graphical User Interface HPC Machine Learning Machine learning Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Regression Sequence analysis Time series Visualization Whole-genome animal beta diversity bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dependence differential equations dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics educational tool environmetrics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming longitudinal data machine learning marginal likelihood microarray missing data missing values mixed effect models mixed integer programming mixed model model model comparison model estimation model selection model specification movement multivariate multivariate regression multivariate statistics network non-parametrics nonlinear equations nonlinear models nonparametric optimization ordination parametric model pattern recognition permutation tests phylogeny plotting political analysis population genetics prediction psychology raster regression remote sensing reporting resampling methods robust statistics sampling simulation social network analysis social networks soil spatial spatial autocorrelation spatial classes spatial data spatial econometrics spatial methods spatial operators spatial point patterns spatial regression spatio-temporal species distribution models spline statistical education survival taxonomic diversity teaching text mining time series trajectory trend analysis visualization

16 projects in result set.
A cookbook of epidemiological models - This package aims to provide a large, diverse set of mathematical models developed in R, including both deterministic and stochastic models, and approaches to parameter estimation.
Tags: epidemiology, IBM, ODE, differential equations, dynamic systems, individual-based models, simulation
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-05-08 13:59

EcoVirtual - Tools for ecological model simulations to help teach ecological theory. It comprises two packages. (1) EcoVirtual: feature set of simulations; (2) RcmdrPluginEcoVirtual: plug-in for Rcmdr inteface
Tags: simulation, ecological models, virtual ecology, Rcmdr
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-05 19:18

First Passage Times - Simulation and inference for diffusion processes in the presence of thresholds.
Tags: stochastic differential equations, first passage times, simulation, inference, thresholds, boundaries

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-05-22 09:20

Individual-based metapopulation model - This package provides functions to run an individual-based metapopulation model, which includes genetic dynamics of diploid individuals, and flexibly defined life-histories.
Tags: simulation, individual-based-model, metapopulation, dispersal, genetics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-07-18 10:30

NetSim: A social network simulation tool - A tool to simulate social networks and individual behavior by combining different dynamic models.
Tags: simulation, social networks

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-01-10 15:10

RRBS Simulation, Modeling and Analysis - The project provides scripts for the simulation, modeling, and analysis of RRBS methylation profiles. Users may generate biologically realistic RRBS datasets and apply a genome-wide algorithm for the detection of differentially methylated regions.
Tags: RRBS, methylation, epigenetics, simulation
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-07-11 16:35

Simulation of clustered multi-state data - R functions implementing the simulation procedure proposed at http://www.slideshare.net/federicorotolo/a-copulabased-simulation-method-for-clustered-multistate-survival-data to generate survival data with a clustered and multi-state structure.
Tags: simulation, copula, frailty models, multi-state models, competing risks models, biostatistics, clustering, survival

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-12-03 10:40

SoilR - The objective of this project is the development of an R package for modeling soil organic matter decomposition. The package contains a collection of different functions commonly used to represent soil organic matter dynamics.
Tags: Ecology, ODE, dynamic systems, ecological models, ecology, simulation, soil
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 76
Activity Ranking: 22
Registered: 2012-01-17 15:38

UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model.
Tags: Bioinformatics, Cancer, Gene expression, bioinformatics, gene expression, simulation, simulations, synthetic dataset

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-03 16:37

Visual Inference Software Development - Convenient and readily available software is lacking for visualizing the process of statistical inference for various applications in statistical practice. The "logic" of inference, should be clearly depicted, if possible.
Tags: Bayesian, likelihood, marginal likelihood, simulation, visualization

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-04-11 12:56

hawkes - Hawkes process simulation in one and several dimensions as well as parametric Hawkes process calibration to data
Tags: Hawkes, simulation, moment calculation
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-04-25 23:03

memisc - This package provides functionality to present analysis results in (almost) publication-ready format. Also some convenience tools for graphics, programming, and simulation are provided.
Tags: data management, LaTeX, R, graphics, reporting, simulation, tables

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-02-08 10:55

senesceR - Simulation of an in vitro population of cells undergoing stochastic transition from replication to senescence.
Tags: population, simulation, cell, replicative, senescence, cellular
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-06-10 16:44

simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
Tags: dynamic systems, differential equations, individual-based models, ODE, IBM, ecology, simulation, ecological models

Activity Percentile: 0
Activity Ranking: 0
Registered: 2008-02-20 20:34

spatial copula - This package is intended to provide the power of copulas to the spatial and spatio-temporal context. It will offer tools and functions to perform spatial analysis exploiting the possibility to fully model the whole dependence structure with copulas.
Tags: copula, multivariate, simulation, spatial, spatial autocorrelation, spatial classes, spatial data, spatial methods, spatial regression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-03-21 17:39

xergm - The xergm package implements eXtensions for Exponential Random Graph Models (ERGM), in particular temporal ERGMs via bootstrapped pseudolikelihood ("btergm") and generalized ERGMs for value-edged networks ("gergm").
Tags: btergm, tergm, ergm, network, bootstrapping, dynamic, model, model estimation, simulation, sna, social networks, social network analysis, ERGM, TERGM, BTERGM, gergm, GERGM, xergm, XERGM

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-04-10 08:16

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