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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

9 projects in result set.
Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, R-Forge, Whole-genome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-02 00:51

DiscreteMTP Package - Procedures to adjust P-values in multiple testing where the test statistics are discrete distributed. The procedures exploit the discreteness to get a larger number of rejected tests while controlling the same FDR level.
Tags: Multiple Comparisons, Bioinformatics, DNA, false discovery rate, microarray

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-04-03 11:32

Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
Tags: Bioinformatics, categorical, data mining, dependence, dissimilarity, entropy, gene expression, genetics, independence, microarray

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-08-10 08:48

OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface.
Tags: Bioinformatics, Clustering, Differential expression analysis, Gene expression, Multiple Comparisons, Multivariate Analysis, bioinformatics, clustering, false discovery rate, gene expression, high dimentional data, microarray, multivariate, permutation tests

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-08-29 17:48

neaGUI - NeaGUI is a user friendly package developed to implement a method of network enrichment analysis (NEA) that extends the overlap statistics in GEA to network links between genes in the experimental set and those in the functional categories.
Tags: network enrichment analysis, microarray, gene expression
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-03-29 19:40

pathview - Pathview is a novel tool set in for pathway based data integration and visualization. It downloads the pathway graph data, parses the data file, maps and integrates user data onto the pathway, and renders pathway graph with the mapped data.
Tags: Bioinformatics, Visualization, gene expression, microarray
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-03-07 22:20

pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation.
Tags: Multiple Comparisons, dissimilarity, distance, high dimentional data, microarray, multidimensional scaling, multiplicity, permutation tests, semiparametric model, spline, variable selection

Activity Percentile: 0
Activity Ranking: 0
Registered: 2010-03-21 02:01

plumbCNV: [see github: nicholasjcooper] - It has been shown that a comprehensive quality control battery for Log-R-Ratio intensity data is needed to reduce the high false positive rate for rare CNV detection [Shtir et al, 2013]. PlumbCNV is an R package that automates this QC pipeline.
Tags: CNV, CNP, SNP, QC, plumbCNV, PCA, bigmemory, bigalgebra, plink, penncnv, R, Copy number variant, microarray, illumina, affy
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-02-07 14:22

therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented.
Tags: microarray, multivariate regression, network, penalized regression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-07-05 08:44

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