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42 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3>
AFLP - A package for the normalisation on classification of AFLP (Amplification Fragment Length Polymorphism) data.
Tags: Bioinformatics, DNA, Normalization, classification, diversity, ecology, taxonomic diversity

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-03-02 11:24

Automated phenological analyses - Automated processing of webcam images for phenological classification: With the present R package, regions of interest on given webcam images can be defined with low manual effort containing pixels with high phenological information.
Tags: image analysis, ecology, clustering, phenology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-05-26 14:30

Bayesian Time-Strat. Population Analysis - BTSPAS provides advanced Bayesian methods to estimate abundance and run-timing from temporally-stratified Petersen mark-recapture experiments. Methods include hierarchical modelling of the capture probabilities and spline smoothing of the daily run size.
Tags: mark-recapture, fisheries, Bayesian, Ecology, ecological models, ecology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2009-10-14 21:55

BioCro - Functions and data for plant and crop modeling. Simulates C4 photosynthesis, biomass production and estimates parameters for plant phyisiological models using optimization techinques and Markov chains.
Tags: agriculture, ecological models, ecology, model, Ecology
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2014-09-18 13:21

BioMod - BIOMOD is a computer platform for ensemble forecasting of species distributions, enabling the treatment of a range of methodological uncertainties in models and the examination of species-environment relationships.
Tags: Ecological niche modeling, species distribution models, ensemble forecasting, ecology, Ecology, model estimation, weighted averages

Activity Percentile: 0
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Registered: 2008-11-13 08:31

ComInd - Community assembly testing in particular using individuals traits values.
Tags: community ecology, ecology, traits, indiduals, niche, null model, species pool

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-03-04 10:10

CommEcol - Analyses in Community Ecology - CommEcol - Data Analyses in Community Ecology
Tags: Ecology, beta diversity, community ecology, community null model, dissimilarity, distance, diversity, diversity partioninig, ecology, environmetrics, functional diversity, nestedness, phylogeny

Activity Percentile: 0
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Registered: 2013-04-25 23:41

DeadCanMove - Locating roadkill hotspots is key to mitigate road impacts on wildlife, but study design can affect hotspot definition. The DeadCanMove R package contains functions to estimate how sampling scheme may affect the spatial accuracy of hotspot identification.
Tags: Ecology, R, animal, comparison, ecology

Activity Percentile: 0
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Registered: 2014-04-01 18:15

Downscaling species occupancy - A set of functions that downscale species occupancy from coarse grain sizes to predict species occupancy at finer grain sizes
Tags: Ecology, ecological models, ecology, spatial
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2015-01-27 10:48

Early Warning Signals Toolbox - The Early-Warning-Signals Toolbox provides to the general practitioner available methods for estimating statistical changes in timeseries that can be used for the in-time identification of critical transitions.
Tags: resilience, leading indicators, regime shifts, critical transitions, fold bifurcation, autocorrelation, variance, skewness, catastrophic shifts, hysteresis, R, R-Forge, dynamic systems, ecology, non-parametrics, nonlinear equations, spatial autocorrelation, spatial data, spatial methods, time series, tipping points, wavelet

Activity Percentile: 0
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Registered: 2011-12-20 21:58

Eddy-Covariance Data Processing - EddyCovariance data processing and plotting utilities * marginal distribution sampling (MDS) gap filling algorithm * ustar filtering, * flux partitioning * Finger print plots
Tags: gap filling, time series, ecology, missing values

Activity Percentile: 0
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Registered: 2013-05-27 12:20

Fish Migration Monitoring (stacomiR) - stacomiR stands for migratory control stations. It enables to read informations in a database dedicated to the monitoring of fish migrations.It allows to build overviews of fish migrations and create charts with data.
Tags: ecology

Activity Percentile: 0
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Registered: 2011-02-23 20:04

GUTS - GUTS (General Unified Threshold model of Survival) is a stochastic survival model for ecotoxicology. GUTS allows for the fast calculation of the survival probabilities and the logarithm of the corresponding likelihood.
Tags: Ecology, Toxicology, ecology
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2012-05-02 12:37

Hierarchical RandomForest - An R package that runs randomForest as a local classifier at each parent node of a pre-defined tree-like class hierarchy.
Tags: Class Hierarchy, habitat, land-cover, land-use, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, out-of-bag, random forest
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2015-01-15 14:20

IPMpack - IPMpack uses demographic vital rate data and (optionally) environmental data to build integral projection models. The package includes diagnostic routines, provides classic matrix model output, and produces post-hoc metrics (e.g., life expectancy).
Tags: R, R-Forge, animal, biostatistics, comparative analysis, ecology, longitudinal data, model comparison, model estimation, projections, survival, time series, trajectory

Activity Percentile: 0
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Registered: 2011-12-10 16:04

Movement Modeling Using CTMCs - The ctmcMove package facilitates modeling animal movement within a continuous-time discrete-space Markov chain (CTMC) framework.
Tags: Ecology, ecology, movement
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2015-10-13 10:29

NullSens - Partitioning Abiotic and Biotic Contributions to Community Variation
Tags: Ecology, Multivariate Analysis, Multivariate Regression, bioinformatics, community ecology, community null model, ecological Inference, ecological models, ecology, linear models, model estimation, model performance, molecular ecology, multivariate regression, nonparametric, null model, parametric model, permutation tests, prediction, regression, robust statistics, simulations, spatial regression, spatio-temporal statistics, species abundance model, species distributions, statistical inference, variance partitioning
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-05 19:49

Plant modelling with Yplant - QuasiMC - <<<< This is an old repository and is no longer used. The new home for YplantQMC is www.bitbucket.org/remkoduursma/yplantqmc >>>>
Tags: ecology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-06-04 23:07

Processing of respiration chamber data - CO2 and water vapour exchange fluxes between a surface and the atmosphere at the meter scale is measured by chambers. Modelling the gas concentration change within a chamber requires adequate protocols of calculation and error treatment.
Tags: data processing, model comparison, uncertainty, ecology, time series, environmetrics

Activity Percentile: 0
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Registered: 2014-11-28 08:20

RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
Tags: chorotypes, biodiversity, diversity, biogeography, geographical biology, distributions, distribution patterns, biostatistics, probabilistic analysis, fuzzy logic, fuzzy sets, similarity, geographic attractors, classification, clustering, ecology, multivariate analysis, spatial data, spatial methods

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-07-04 09:37

42 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3>
Thanks to:
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