Software Map

Tag cloud | Project Tree | Project List


ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

15 projects in result set.
Bayesian Time-Strat. Population Analysis - BTSPAS provides advanced Bayesian methods to estimate abundance and run-timing from temporally-stratified Petersen mark-recapture experiments. Methods include hierarchical modelling of the capture probabilities and spline smoothing of the daily run size.
Tags: mark-recapture, fisheries, Bayesian, Ecology, ecological models, ecology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2009-10-14 21:55

BioCro - Functions and data for plant and crop modeling. Simulates C4 photosynthesis, biomass production and estimates parameters for plant phyisiological models using optimization techinques and Markov chains.
Tags: agriculture, ecological models, ecology, model, Ecology
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-09-18 13:21

Downscaling species occupancy - A set of functions that downscale species occupancy from coarse grain sizes to predict species occupancy at finer grain sizes
Tags: Ecology, ecological models, ecology, spatial
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-01-27 10:48

EcoVirtual - Tools for ecological model simulations to help teach ecological theory. It comprises two packages. (1) EcoVirtual: feature set of simulations; (2) RcmdrPluginEcoVirtual: plug-in for Rcmdr inteface
Tags: simulation, ecological models, virtual ecology, Rcmdr
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-05 19:18

Hierarchical RandomForest - An R package that runs randomForest as a local classifier at each parent node of a pre-defined tree-like class hierarchy.
Tags: Class Hierarchy, habitat, land-cover, land-use, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, out-of-bag, random forest
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-01-15 14:20

Movement Analysis - Analysis of trajectory data. Compute home ranges, speed distributions and detect movement patterns based on the Brownian bridge movement model.
Tags: Ecology, brownian bridge, ecological models, movement, spatial data, spatio-temporal, trajectory

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-04-09 16:55

NullSens - Partitioning Abiotic and Biotic Contributions to Community Variation
Tags: Ecology, Multivariate Analysis, Multivariate Regression, bioinformatics, community ecology, community null model, ecological Inference, ecological models, ecology, linear models, model estimation, model performance, molecular ecology, multivariate regression, nonparametric, null model, parametric model, permutation tests, prediction, regression, robust statistics, simulations, spatial regression, spatio-temporal statistics, species abundance model, species distributions, statistical inference, variance partitioning
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-05 19:49

ODE Solvers Compiled On-Demand - The odeintr package generates compiled ODE solvers on-demand. It uses the Boost odeint library and Rcpp.
Tags: C++, Ecology, Economics, Fast, Fisheries, Forestry, HPC, ODE, R, Rcpp, dynamic systems, ecological models, ordinary differential equations, simulation, solver
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-05-06 21:14

SoilR - We have moved to https://github.com/MPIBGC-TEE/SoilR-exp This repository is not maintained any more
Tags: Ecology, ODE, dynamic systems, ecological models, ecology, simulation, soil
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-01-17 15:38

Spatial dynamic modeling - spdynamic is a framework to implement spatially-explicit dynamic simulation models. This package provides easy to use functions to organize scenarios of spatial dynamic simulations as well as read, visualize and access spatio-temporal data in the models.
Tags: dynamic systems, ecological models, spatial, spatio-temporal

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-11-25 08:45

deSolve: Differential Equation Solvers - deSolve is a collection of solvers, mostly from the 'lsode' family of solvers. deSolve provides R interfaces to solvers for stiff and non-stiff systems, and can take system descriptions in R, or as defined in dynamically loaded compiled code.
Tags: ODE, differential equations, dynamic systems, ecological models, economic, finance, solver

Activity Percentile: 0
Activity Ranking: 0
Registered: 2008-03-26 19:38

modEvA - modEvA is an R package for species distribution model evaluation and analysis.
Tags: model performance, model evaluation, Ecological niche modeling, GLM, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, agreement, bivariate analysis, calibration, ecological Inference, ecological models, false discovery rate, generalized linear models, logistic, model, model comparison, model estimation, model selection, multivariate, multivariate regression, optimization, positive predictive value, sensitivity, species distribution models, specificity, variance partitioning

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-04-04 11:51

pcurve: principal curves - Package pcurve fits principal curves in high dimensions. It can be thought of as a non-linear form of PCA. pcurve is an R port of Glenn De'aths pcurve library for S-Plus.
Tags: principal curves, ordination, Ecology, Machine Learning, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, community ecology, constrained ordination, ecological models, ecology, environmetrics, machine learning, multivariate, multivariate regression, multivariate smoothing, multivariate statistics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-05-30 16:42

simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
Tags: dynamic systems, differential equations, individual-based models, ODE, IBM, ecology, simulation, ecological models

Activity Percentile: 0
Activity Ranking: 0
Registered: 2008-02-20 20:34

the CTDS Movement Modeling - The 'ctds' package provides code to fit a continuous-time, discrete-space model to animal movement data, such as telemetry or GPS data. Potential drivers of animal movement include landscape features, environmental covariates, and conspecifics.
Tags: Ecology, ecological models, ecology, individual-based models, movement, raster
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-10-15 21:04

Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge