Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models survival teaching text mining time series visualization
15 projects in result set.
Bayesian TimeStrat. Population Analysis  BTSPAS provides advanced Bayesian methods to estimate abundance and runtiming from temporallystratified Petersen markrecapture experiments. Methods include hierarchical modelling of the capture probabilities and spline smoothing of the daily run size.  
Tags: markrecapture, fisheries, Bayesian, Ecology, ecological models, ecology  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20091014 21:55 
BioCro  Functions and data for plant and crop modeling. Simulates C4 photosynthesis, biomass production and estimates parameters for plant phyisiological models using optimization techinques and Markov chains.  
Tags: agriculture, ecological models, ecology, model, Ecology  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140918 13:21 
Downscaling species occupancy  A set of functions that downscale species occupancy from coarse grain sizes to predict species occupancy at finer grain sizes  
Tags: Ecology, ecological models, ecology, spatial  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150127 10:48 
EcoVirtual  Tools for ecological model simulations to help teach ecological theory. It comprises two packages. (1) EcoVirtual: feature set of simulations; (2) RcmdrPluginEcoVirtual: plugin for Rcmdr inteface  
Tags: simulation, ecological models, virtual ecology, Rcmdr  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20110205 19:18 
Hierarchical RandomForest  An R package that runs randomForest as a local classifier at each parent node of a predefined treelike class hierarchy.  
Tags: Class Hierarchy, habitat, landcover, landuse, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, outofbag, random forest  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150115 14:20 
Movement Analysis  Analysis of trajectory data. Compute home ranges, speed distributions and detect movement patterns based on the Brownian bridge movement model.  
Tags: Ecology, brownian bridge, ecological models, movement, spatial data, spatiotemporal, trajectory  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150409 16:55 
NullSens  Partitioning Abiotic and Biotic Contributions to Community Variation  
Tags: Ecology, Multivariate Analysis, Multivariate Regression, bioinformatics, community ecology, community null model, ecological Inference, ecological models, ecology, linear models, model estimation, model performance, molecular ecology, multivariate regression, nonparametric, null model, parametric model, permutation tests, prediction, regression, robust statistics, simulations, spatial regression, spatiotemporal statistics, species abundance model, species distributions, statistical inference, variance partitioning  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140505 19:49 
ODE Solvers Compiled OnDemand  The odeintr package generates compiled ODE solvers ondemand. It uses the Boost odeint library and Rcpp.  
Tags: C++, Ecology, Economics, Fast, Fisheries, Forestry, HPC, ODE, R, Rcpp, dynamic systems, ecological models, ordinary differential equations, simulation, solver  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150506 21:14 
SoilR  The objective of this project is the development of an R package for modeling soil organic matter decomposition. The package contains a collection of different functions commonly used to represent soil organic matter dynamics.  
Tags: Ecology, ODE, dynamic systems, ecological models, ecology, simulation, soil  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120117 15:38 
Spatial dynamic modeling  spdynamic is a framework to implement spatiallyexplicit dynamic simulation models. This package provides easy to use functions to organize scenarios of spatial dynamic simulations as well as read, visualize and access spatiotemporal data in the models.  
Tags: dynamic systems, ecological models, spatial, spatiotemporal  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20111125 08:45 
deSolve: Differential Equation Solvers  deSolve is a collection of solvers, mostly from the 'lsode' family of solvers. deSolve provides R interfaces to solvers for stiff and nonstiff systems, and can take system descriptions in R, or as defined in dynamically loaded compiled code.  
Tags: ODE, differential equations, dynamic systems, ecological models, economic, finance, solver  

Activity Percentile: 33 Activity Ranking: 34 Registered: 20080326 19:38 
modEvA  modEvA is an R package for species distribution model evaluation and analysis.  
Tags: model performance, model evaluation, Ecological niche modeling, GLM, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, agreement, bivariate analysis, calibration, ecological Inference, ecological models, false discovery rate, generalized linear models, logistic, model, model comparison, model estimation, model selection, multivariate, multivariate regression, optimization, positive predictive value, sensitivity, species distribution models, specificity, variance partitioning  

Activity Percentile: 55 Activity Ranking: 23 Registered: 20140404 11:51 
pcurve: principal curves  Package pcurve fits principal curves in high dimensions. It can be thought of as a nonlinear form of PCA. pcurve is an R port of Glenn De'aths pcurve library for SPlus.  
Tags: principal curves, ordination, Ecology, Machine Learning, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, community ecology, constrained ordination, ecological models, ecology, environmetrics, machine learning, multivariate, multivariate regression, multivariate smoothing, multivariate statistics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130530 16:42 
simecol  Ecological Models with R  simecol allows to implement ecological models (ODEs, IBMs, ...) using a templatelike objectoriented stucture. It helps to organize scenarios and may also be useful for other areas.  
Tags: dynamic systems, differential equations, individualbased models, ODE, IBM, ecology, simulation, ecological models  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20080220 20:34 
the CTDS Movement Modeling  The 'ctds' package provides code to fit a continuoustime, discretespace model to animal movement data, such as telemetry or GPS data. Potential drivers of animal movement include landscape features, environmental covariates, and conspecifics.  
Tags: Ecology, ecological models, ecology, individualbased models, movement, raster  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121015 21:04 