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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques ODE Phylogeny R R-Forge Regression Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics epidemiology finance gene expression generalized linear models graphics high dimentional data inference likelihood linear programming machine learning microarray missing data mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression reporting robust robust statistics simulation social networks soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

9 projects in result set.
AFLP - A package for the normalisation on classification of AFLP (Amplification Fragment Length Polymorphism) data.
Tags: Bioinformatics, DNA, Normalization, classification, diversity, ecology, taxonomic diversity

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-03-02 11:24

CommEcol - Analyses in Community Ecology - CommEcol - Data Analyses in Community Ecology
Tags: Ecology, beta diversity, community ecology, community null model, dissimilarity, distance, diversity, diversity partioninig, ecology, environmetrics, functional diversity, nestedness, phylogeny

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-04-25 23:41

RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
Tags: chorotypes, biodiversity, diversity, biogeography, geographical biology, distributions, distribution patterns, biostatistics, probabilistic analysis, fuzzy logic, fuzzy sets, similarity, geographic attractors, classification, clustering, ecology, multivariate analysis, spatial data, spatial methods

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-07-04 09:37

Species Abundance Distributions - Tools to fit and compare models of species abundance distribution using likelihood-based methods
Tags: community ecology, diversity, ecology, species abundance model, Ecology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-01-24 12:50

Species identity and evolution in R - A suite of tools for investigating the evolution, variation and identification of species. Includes functions for DNA barcoding, and sliding window analyses.
Tags: Bioinformatics, Genetic Algorithms, clustering, diversity, ordination, phylogeny, sequence analysis, species accumulation, taxonomic diversity, tree, visualization

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-04-15 00:09

bat - Biodiversity Assessment Tools - An R package useful for biodiversity assessment, including: - Taxon, phylogenetic and functional dimensions of alpha and beta diversity - Accumulation curves for all measures - Diversity estimation from incomplete sampling - Beta diversity partition
Tags: beta diversity, community ecology, dissimilarity, diversity, diversity partitioning, ecology, extrapolated richness, functional diversity, species accumulation, taxonomic diversity, phylogenetic diversity, biodiversity estimation

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-14 11:14

picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R
Tags: beta diversity, community ecology, diversity, ecology, phylogeny

Activity Percentile: 0
Activity Ranking: 0
Registered: 2008-01-16 22:15

vegan - Community Ecology Package - 'vegan' is a CRAN package for the analysis of ecological communities. It has tools for analysing ecological diversity, and for the multivariate analysis of communities (NMDS, pCCA, pRDA etc.)
Tags: minimum spanning tree, weighted averages, species abundance model, Mantel test, local NMDS, nestedness, community null model, PCNM, PRC, global NMDS, MRPP, CCA, pCCA, RDA, pRDA, dbRDA, constrained ordination, canonical ordination, bioenv, detrended correspondence analysis, DCA, dissimilarity, distance, ecology, ordination, diversity, correspondence analysis, multidimensional scaling, nonparametric anova, functional diversity, taxonomic diversity, beta diversity, rarefaction, species pool, extrapolated richness, community ecology, species accumulation, diversity partioninig, variance partitioning, isotonic regression

Activity Percentile: 42
Activity Ranking: 35
Registered: 2007-09-05 13:59

vegsoup - classes for phytosociology - S4 classes for vegetation-plot data (relev├ęs) documenting community structure, sites data, taxonomy and spatial representation. Methods are provided for data manipulation, clustering, indicator species analysis and typesetting tables with LaTex.
Tags: community ecology, diversity, ecology, spatial, spatial data, clustering, database, raster

Activity Percentile: 24
Activity Ranking: 46
Registered: 2011-06-07 12:24

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