Software Map

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ANOVA Artificial Neural Network Bayesian Bioinformatics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GDAL GUI Genetic Algorithms Genetics Graphical User Interface HPC Machine Learning Machine learning Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Regression Sequence analysis Time series Visualization Whole-genome animal beta diversity bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dependence differential equations dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics educational tool environmetrics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming longitudinal data machine learning marginal likelihood microarray missing data missing values mixed effect models mixed integer programming mixed model model model comparison model estimation model selection model specification movement multivariate multivariate regression multivariate statistics network non-parametrics nonlinear equations nonlinear models nonparametric optimization ordination parametric model pattern recognition permutation tests phylogeny plotting political analysis population genetics prediction psychology raster regression remote sensing reporting resampling methods robust statistics sampling simulation social network analysis social networks soil spatial spatial autocorrelation spatial classes spatial data spatial econometrics spatial methods spatial operators spatial point patterns spatial regression spatio-temporal species distribution models spline statistical education survival taxonomic diversity teaching text mining time series trajectory trend analysis visualization

8 projects in result set.
AFLP - A package for the normalisation on classification of AFLP (Amplification Fragment Length Polymorphism) data.
Tags: Bioinformatics, DNA, Normalization, classification, diversity, ecology, taxonomic diversity

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-03-02 11:24

CommEcol - Analyses in Community Ecology - CommEcol - Data Analyses in Community Ecology
Tags: Ecology, beta diversity, community ecology, community null model, dissimilarity, distance, diversity, diversity partioninig, ecology, environmetrics, functional diversity, nestedness, phylogeny

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-04-25 23:41

Species Abundance Distributions - Tools to fit and compare models of species abundance distribution using likelihood-based methods
Tags: community ecology, diversity, ecology, species abundance model, Ecology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-01-24 12:50

Species identity and evolution in R - A suite of tools for investigating the evolution, variation and identification of species. Includes functions for DNA barcoding, and sliding window analyses.
Tags: Bioinformatics, Genetic Algorithms, clustering, diversity, ordination, phylogeny, sequence analysis, species accumulation, taxonomic diversity, tree, visualization

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-04-15 00:09

bat - Biodiversity Assessment Tools - An R package useful for biodiversity assessment, including: - Taxon, phylogenetic and functional dimensions of alpha and beta diversity - Accumulation curves for all measures - Diversity estimation from incomplete sampling - Beta diversity partition
Tags: beta diversity, community ecology, dissimilarity, diversity, diversity partitioning, ecology, extrapolated richness, functional diversity, species accumulation, taxonomic diversity, phylogenetic diversity, biodiversity estimation

Activity Percentile: 73
Activity Ranking: 24
Registered: 2014-05-14 11:14

picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R
Tags: beta diversity, community ecology, diversity, ecology, phylogeny

Activity Percentile: 0
Activity Ranking: 0
Registered: 2008-01-16 22:15

vegan - Community Ecology Package - 'vegan' is a CRAN package for the analysis of ecological communities. It has tools for analysing ecological diversity, and for the multivariate analysis of communities (NMDS, pCCA, pRDA etc.)
Tags: minimum spanning tree, weighted averages, species abundance model, Mantel test, local NMDS, nestedness, community null model, PCNM, PRC, global NMDS, MRPP, CCA, pCCA, RDA, pRDA, dbRDA, constrained ordination, canonical ordination, bioenv, detrended correspondence analysis, DCA, dissimilarity, distance, ecology, ordination, diversity, correspondence analysis, multidimensional scaling, nonparametric anova, functional diversity, taxonomic diversity, beta diversity, rarefaction, species pool, extrapolated richness, community ecology, species accumulation, diversity partioninig, variance partitioning, isotonic regression

Activity Percentile: 95
Activity Ranking: 5
Registered: 2007-09-05 13:59

vegsoup - classes for phytosociology - S4 classes for phytosociological data. The classes document community samples, sites data, taxonomy and spatial representation. Methods are provided for data manipulation, multivariate analysis, indicator species analysis and typesetting of LaTex tables.
Tags: community ecology, diversity, ecology, spatial, spatial data

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-06-07 12:24

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