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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

29 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, R-Forge, Whole-genome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-02 00:51

CALIBER health records research toolkit - CALIBER (www.caliberresearch.org) is a programme of cardiovascular disease research using electronic health records in England, funded by the Wellcome Trust and the National Institute for Health Research. This project shares tools we have developed.
Tags: biostatistics, missing, missing data, missing values, missingness

Activity Percentile: 0
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Registered: 2013-02-14 21:49

CNAV - A hidden Markov model approach is used to infer frequencies and haplotype phases of genotypes containing joint allelic and copy-number variation to be used in association studies.
Tags: Markov model, serial tempering, Gibbs sampling, Bayesian, Bioinformatics, Boost, C++, Genetics, bioinformatics, biostatistics, sampling
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2013-05-08 14:18

Clusterwise Effect Regression - This software implements an algorithm that proposes variable clustering within high dimensional linear and probit regression models. The estimation strategy is based on mixed Gibbs Sampling and Stochastic EM algorithm.
Tags: C++, Clustering, biostatistics, high dimentional data, multivariate regression, regression
This project has not yet categorized itself in the Trove Software Map


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Registered: 2013-08-20 09:47

Computer-Assisted Analysis of Mixtures - Tools for the analysis of finite semiparametric mixtures. These are useful when data is heterogeneous, e.g. in pharmacokinetics or meta-analysis. The NPMLE and VEM algorithms (flexible support size) and EM algorithms (finite support case) are provided.
Tags: mixture modelling, biostatistics, classification, clustering
This project has not yet categorized itself in the Trove Software Map


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Registered: 2013-03-06 09:55

Disease progression models - Methods for fitting multistate disease process models
Tags: biostatistics, longitudinal data, multi-state models, panel data analysis, survival
This project has not yet categorized itself in the Trove Software Map


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Registered: 2012-05-31 18:33

Eye movement analysis package - The emov package contains saccade and fixation detection algorithms to analyze eye movements.
Tags: Bioinformatics, biostatistics

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Registered: 2010-10-24 13:21

Hierarchical RandomForest - An R package that runs randomForest as a local classifier at each parent node of a pre-defined tree-like class hierarchy.
Tags: Class Hierarchy, habitat, land-cover, land-use, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, out-of-bag, random forest
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2015-01-15 14:20

IPMpack - IPMpack uses demographic vital rate data and (optionally) environmental data to build integral projection models. The package includes diagnostic routines, provides classic matrix model output, and produces post-hoc metrics (e.g., life expectancy).
Tags: R, R-Forge, animal, biostatistics, comparative analysis, ecology, longitudinal data, model comparison, model estimation, projections, survival, time series, trajectory

Activity Percentile: 0
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Registered: 2011-12-10 16:04

Joint segmentation [MOVED TO GITHUB] - This package implements functions to quickly segment multivariate signals into piecewise constant profiles. Typical application: joint segmentation of DNA copy number signals obtained from Single Nucleotide Polymorphism microarrays in cancer studies.
Tags: Bioinformatics, CNV, Cancer, Copynumber, biostatistics, break detection, high dimentional data
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2013-01-04 20:37

Misc Biostats Tools from EBPI@UZH - Miscellaneous tools for biostats courses and consulting projects at the Department of Biostatistics, Epidemiology, Biostatistics and Prevention Institute, University of Zurich, Zurich, Switzerland.
Tags: sample size calculation, ROC, Weibull, agreement, biostatistics, bootstrapping, diagnostic test, epidemiology, reliability, reporting, survival

Activity Percentile: 0
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Registered: 2015-02-09 17:58

Multilevel frailty models - Semiparametric proportional hazard models with K random effects, estimated via the EM-PL algorithm (Horny, 2009)
Tags: biostatistics, clustering, dependence, economics, event histories, event sequence, finance, frailty models, longitudinal data, mixed effect models, mixed model, model estimation, multicenter, multivariate, heterogeneity, overdispersion, survival, semiparametric model

Activity Percentile: 0
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Registered: 2012-04-30 07:14

Parametric Frailty Models - Parametric Frailty Models, fitted by maximum marginal likelihood method. Possible basline hazards: Weibull, Exponential, Gompertz, logNormal and loglogistic Possible Frailty distributions: Gamma, Inverse Gaussian and Positive Stable
Tags: survival, frailty models, parametric model, Weibull, Exponential, Gompertz, lognormal, loglogistic, gamma, inverse gaussian, positive stable, clustering, overdispersion, biostatistics, marginal model, marginal likelihood, likelihood, multicenter, heterogeneity, mixed effect models, mixed model

Activity Percentile: 0
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Registered: 2011-10-28 16:21

Probabilistic Index Models - Developing an R-package for a new class of regression models: Probabilistic Index Models.
Tags: Probabilistic Index Models, regression, modeling, nonparametric, semiparametric, Bioinformatics, Bioinformatics & Biostatistics, Biostatistics, Multiple Comparisons, Regression, biostatistics

Activity Percentile: 0
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Registered: 2011-06-09 14:01

RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
Tags: chorotypes, biodiversity, diversity, biogeography, geographical biology, distributions, distribution patterns, biostatistics, probabilistic analysis, fuzzy logic, fuzzy sets, similarity, geographic attractors, classification, clustering, ecology, multivariate analysis, spatial data, spatial methods

Activity Percentile: 0
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Registered: 2015-07-04 09:37

Real-time prediction of dengue outbreak - The project provides functions for parameter estimation and real-time predictions of a single dengue outbreak taking into account model uncertainty via model averaging. Graphical tools for a visualization of the results are also included.
Tags: biostatistics, epidemiology, model averaging, model estimation, nonlinear models, prediction
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2015-06-30 18:57

Simulation of clustered multi-state data - R functions implementing the simulation procedure proposed at http://www.slideshare.net/federicorotolo/a-copulabased-simulation-method-for-clustered-multistate-survival-data to generate survival data with a clustered and multi-state structure.
Tags: simulation, copula, frailty models, multi-state models, competing risks models, biostatistics, clustering, survival

Activity Percentile: 0
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Registered: 2011-12-03 10:40

Statistical methods for visual fields - a collection of tools for analyzing the field of vision. It provides a framework for development and use of innovative methods for visualisation, statistical analysis, and clinical interpretation of visual field loss and its change over time
Tags: glaucoma, visual fields, biostatistics

Activity Percentile: 0
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Registered: 2011-10-14 00:24

Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model.
Tags: Bioinformatics, R, R-Forge, biostatistics, likelihood, model comparison

Activity Percentile: 0
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Registered: 2012-07-03 03:50

WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
Tags: chipseq, peakcalling, Bioinformatics, Next generation Sequencing, biostatistics, wavelet

Activity Percentile: 0
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Registered: 2013-11-21 21:46

29 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
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