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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

13 projects in result set.
CNAV - A hidden Markov model approach is used to infer frequencies and haplotype phases of genotypes containing joint allelic and copy-number variation to be used in association studies.
Tags: Markov model, serial tempering, Gibbs sampling, Bayesian, Bioinformatics, Boost, C++, Genetics, bioinformatics, biostatistics, sampling
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-05-08 14:18

Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes.
Tags: Bioinformatics, Gene expression, Genetic Algorithms, Machine Learning, Machine learning, Multivariate Regression, Self-Organizing Map, bioinformatics, classification, cross-validation, gene expression, genetic algorithms, machine learning, model, prediction, validation

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-03 16:15

Hierarchical RandomForest - An R package that runs randomForest as a local classifier at each parent node of a pre-defined tree-like class hierarchy.
Tags: Class Hierarchy, habitat, land-cover, land-use, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, out-of-bag, random forest
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-01-15 14:20

LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
Tags: bioinformatics, whole-genome, haplotype blocks

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-01-21 21:13

NameNeedle - Using Needleman-Wunsch to Match Sample Names
Tags: Bioinformatics, DNA, bioinformatics, matching, optimal matching

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-03 16:21

NullSens - Partitioning Abiotic and Biotic Contributions to Community Variation
Tags: Ecology, Multivariate Analysis, Multivariate Regression, bioinformatics, community ecology, community null model, ecological Inference, ecological models, ecology, linear models, model estimation, model performance, molecular ecology, multivariate regression, nonparametric, null model, parametric model, permutation tests, prediction, regression, robust statistics, simulations, spatial regression, spatio-temporal statistics, species abundance model, species distributions, statistical inference, variance partitioning
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-05 19:49

OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface.
Tags: Bioinformatics, Clustering, Differential expression analysis, Gene expression, Multiple Comparisons, Multivariate Analysis, bioinformatics, clustering, false discovery rate, gene expression, high dimentional data, microarray, multivariate, permutation tests

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-08-29 17:48

Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS). Packages in this project: PSCBS.
Tags: Cancer, Copynumber, DNA, Genetics, QC, SNP, bioinformatics, segmentation

Activity Percentile: 0
Activity Ranking: 0
Registered: 2009-10-20 01:21

SuperCurve - SuperCurve is a set of packages to analyze reverse phase protein (lysate) arrays (RPPA), which is being used to analyze data as part of The Cancer Genome Atlas.
Tags: Bioinformatics, bioinformatics, proteomics, reverse phase lysate array, RPPA
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-08 13:21

UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model.
Tags: Bioinformatics, Cancer, Gene expression, bioinformatics, gene expression, simulation, simulations, synthetic dataset

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-03 16:37

netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach.
Tags: ensemble performance, network-based error measures, bioinformatics, biostatistics, gene networks, Bioinformatics, genetic interaction

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-07-26 14:26

plantlist: Looking Up Plant APG Families - Looking up APGIII Families and check of Synonyms for plants
Tags: ecology, Phylogeny, phylogenetic diversity, phylogeny, environmetrics, Conservation, Ecological monitoring, Evolution, biodiversity, bioinformatics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-03-20 06:26

polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
Tags: Bioinformatics, Genetics, Plant Breeding, Plant Genomics, SNP, bioinformatics, heuristics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-05 10:27

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Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge