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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

8 projects in result set.
Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, R-Forge, Whole-genome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-02 00:51

GWASBinTests - Bin-based analysis of genome-wide association studies Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute p-values (and FDRs) of several association tests.
Tags: Bioinformatics, Whole-genome

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-10-07 17:59

Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions.
Tags: Bioinformatics, Classification, Clustering, Fuzzy Sets, Graphical model, Machine Learning, Machine learning, Multivariate Analysis, Multivariate Techniques, Whole-genome, classification, clustering, copula, machine learning, mixed model, multivariate statistics, parametric model, mixture model

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-05-10 07:45

Multilocus Random Mixed Linear Model - Multilocus Random Mixed Linear Model for Genome-wide Association Study
Tags: Bioinformatics, Biostatistics, Genetics, MLM, R, SNP, Whole-genome, mixed model, multi-dimensions
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-02-25 14:46

ParallLogicReg - ParallLogicReg: an R library for analysis of SNP-SNP interaction using parallel computing.
Tags: R, Whole-genome, high performance computing
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-05-03 23:26

Patchwork - Allele-specific Copy-number analysis for whole-genome sequenced data in CompleteGenomics or BAM format.
Tags: Copynumber, Whole-genome, Cancer, R, Visualization, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-10-31 13:53

genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.
Tags: gene maps, genomics, Bioinformatics, DNA, Visualization, Whole-genome

Activity Percentile: 0
Activity Ranking: 0
Registered: 2010-01-08 16:59

synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
Tags: Bioinformatics, Genetic Algorithms, Whole-genome

Activity Percentile: 53
Activity Ranking: 23
Registered: 2010-03-05 10:51

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