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7 projects in result set.
CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
Tags: Bioinformatics, SNP, genetics, genomics, relatedness

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-31 04:36

Multilocus Random Mixed Linear Model - Multilocus Random Mixed Linear Model for Genome-wide Association Study
Tags: Bioinformatics, Biostatistics, Genetics, MLM, R, SNP, Whole-genome, mixed model, multi-dimensions
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-02-25 14:46

Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS). Packages in this project: PSCBS.
Tags: Cancer, Copynumber, DNA, Genetics, QC, SNP, bioinformatics, segmentation

Activity Percentile: 0
Activity Ranking: 0
Registered: 2009-10-20 01:21

XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
Tags: Bioinformatics, Genetics, Ontology, Networks, Similarity, SNP

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-04-01 13:46

plumbCNV: [see github: nicholasjcooper] - It has been shown that a comprehensive quality control battery for Log-R-Ratio intensity data is needed to reduce the high false positive rate for rare CNV detection [Shtir et al, 2013]. PlumbCNV is an R package that automates this QC pipeline.
Tags: CNV, CNP, SNP, QC, plumbCNV, PCA, bigmemory, bigalgebra, plink, penncnv, R, Copy number variant, microarray, illumina, affy
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-02-07 14:22

polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
Tags: Bioinformatics, Genetics, Plant Breeding, Plant Genomics, SNP, bioinformatics, heuristics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-05 10:27

related - Genetic relatedness in R - An R package that allows users to estimate pairwise relatedness of individuals based on codominant molecular markers, and also has simulation functions for comparing the performance of different estimators and for testing the resolution of a data set.
Tags: population genetics, relatedness, microsatellite, SNP

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-04-09 08:33

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