Software Map
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7 projects in result set.
A cookbook of epidemiological models  This package aims to provide a large, diverse set of mathematical models developed in R, including both deterministic and stochastic models, and approaches to parameter estimation.  
Tags: epidemiology, IBM, ODE, differential equations, dynamic systems, individualbased models, simulation  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130508 13:59 
ODE Solvers Compiled OnDemand  The odeintr package generates compiled ODE solvers ondemand. It uses the Boost odeint library and Rcpp.  
Tags: C++, Ecology, Economics, Fast, Fisheries, Forestry, HPC, ODE, R, Rcpp, dynamic systems, ecological models, ordinary differential equations, simulation, solver  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150506 21:14 
Phase plane plots  Producing phase plane plots of 2d nonlinear systems. Including nullclines and trajectories  
Tags: ODE, nonlinear equations, nonlinear models, visualization, phase space, phase plane, system dynamics, trajectories  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130218 14:15 
SoilR  The objective of this project is the development of an R package for modeling soil organic matter decomposition. The package contains a collection of different functions commonly used to represent soil organic matter dynamics.  
Tags: Ecology, ODE, dynamic systems, ecological models, ecology, simulation, soil  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120117 15:38 
deSolve: Differential Equation Solvers  deSolve is a collection of solvers, mostly from the 'lsode' family of solvers. deSolve provides R interfaces to solvers for stiff and nonstiff systems, and can take system descriptions in R, or as defined in dynamically loaded compiled code.  
Tags: ODE, differential equations, dynamic systems, ecological models, economic, finance, solver  

Activity Percentile: 33 Activity Ranking: 34 Registered: 20080326 19:38 
kinfit/(g)mkin: fit chemical degradation  kinfit and mkin are implementations of the kinetic models and evaluation procedures recommended by in the final report of the FOCUS work group on degradation kinetics first published in 2006. gmkin provides a graphical user interface to mkin.  
Tags: ODE, differential equations, optimization  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20091130 15:56 
simecol  Ecological Models with R  simecol allows to implement ecological models (ODEs, IBMs, ...) using a templatelike objectoriented stucture. It helps to organize scenarios and may also be useful for other areas.  
Tags: dynamic systems, differential equations, individualbased models, ODE, IBM, ecology, simulation, ecological models  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20080220 20:34 