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7 projects in result set.
Finite Mixure of AFT and FMR models - FMRS package provides estimation and variable selection in Finite Mixture of Accelerated Failure Time Regression (FMAFTR) and Finite Mixture of Regression (FMR) models with a large number of covariates and/or right censoring and heterogeneous structure.
Tags: Bioinformatics, Biostatistics, C++, Cancer, Medical Science, Mixture, Next generation Sequencing, R, Regression, Statistics, lasso, model estimation, model selection, penalized regression, regularization, survival, tuning parameters, variable selection

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-03-07 02:31

HTDA (High Throughput Data Analysis) - A generic platform for the analysis of high throughput transcriptomics, proteomics and metabolomics data.
Tags: Bioinformatics, Differential expression analysis, Multivariate Analysis, Next generation Sequencing, RNA-seq
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-06-28 11:59

HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data.
Tags: Filter, RNA-seq, Differential expression analysis, Bioinformatics, Next generation Sequencing, gene expression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-10-16 20:41

Quantify RNA-Seq data - The package can read alignment BAM file from RNA-seq and gene annotation from genomic databases directly to quantify the gene abundances in different levels.
Tags: Next generation Sequencing, Bioinformatics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-05-09 18:25

WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
Tags: chipseq, peakcalling, Bioinformatics, Next generation Sequencing, biostatistics, wavelet

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-11-21 21:46

casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.
Tags: Differential expression analysis, Next generation Sequencing, RNA-seq, Second-generation Sequencing

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-10-11 08:51

patternCNV - patternCNV is a versatile tool to facilitate CNV detection and interpretation from either Germline or Tumor/Normal pairs of Exome-seq samples.
Tags: Next generation Sequencing, R, R-Forge, quality control in science
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-01-03 19:01

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