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35 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
Bayesian Time-Strat. Population Analysis - BTSPAS provides advanced Bayesian methods to estimate abundance and run-timing from temporally-stratified Petersen mark-recapture experiments. Methods include hierarchical modelling of the capture probabilities and spline smoothing of the daily run size.
Tags: mark-recapture, fisheries, Bayesian, Ecology, ecological models, ecology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2009-10-14 21:55

BioCro - Functions and data for plant and crop modeling. Simulates C4 photosynthesis, biomass production and estimates parameters for plant phyisiological models using optimization techinques and Markov chains.
Tags: agriculture, ecological models, ecology, model, Ecology
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-09-18 13:21

BioMod - BIOMOD is a computer platform for ensemble forecasting of species distributions, enabling the treatment of a range of methodological uncertainties in models and the examination of species-environment relationships.
Tags: Ecological niche modeling, species distribution models, ensemble forecasting, ecology, Ecology, model estimation, weighted averages

Activity Percentile: 93
Activity Ranking: 4
Registered: 2008-11-13 08:31

Coalescent for compartmental models - This package provides methods to compute the likelihood of a gene genealogy using coalescent models for populations with complex demographic histories.
Tags: population genetics, epidemiology, infectious disease, Bioinformatics, Ecology, Genetics, Phylogeny
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-01-09 23:07

CommEcol - Analyses in Community Ecology - CommEcol - Data Analyses in Community Ecology
Tags: Ecology, beta diversity, community ecology, community null model, dissimilarity, distance, diversity, diversity partioninig, ecology, environmetrics, functional diversity, nestedness, phylogeny

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-04-25 23:41

DeadCanMove - Locating roadkill hotspots is key to mitigate road impacts on wildlife, but study design can affect hotspot definition. The DeadCanMove R package contains functions to estimate how sampling scheme may affect the spatial accuracy of hotspot identification.
Tags: Ecology, R, animal, comparison, ecology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-04-01 18:15

Downscaling species occupancy - A set of functions that downscale species occupancy from coarse grain sizes to predict species occupancy at finer grain sizes
Tags: Ecology, ecological models, ecology, spatial
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-01-27 10:48

EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/
Tags: Abundance, Bioinformatics, Bioinformatics & Biostatistics, Count estimates, Ecological monitoring, Ecology, Environmental monitoring, Metagenomic, biodiversity, biodiversity estimation, bioenv, community ecology, diversity, species accumulation, species distributions

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-10-08 19:20

G2Sd - G2Sd (Grain-size Statistics and Description of Sediment) gives full descriptive statistics and a physical description of sediment obtained with metric or phi sieves according to the grain size distribution
Tags: folk-ward statistics, sediment, grain-size distribution, texture, sedimentology, Ecology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-04-14 07:27

GUTS - GUTS (General Unified Threshold model of Survival) is a stochastic survival model for ecotoxicology. GUTS allows for the fast calculation of the survival probabilities and the logarithm of the corresponding likelihood.
Tags: Ecology, Toxicology, ecology
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-05-02 12:37

Hierarchical RandomForest - An R package that runs randomForest as a local classifier at each parent node of a pre-defined tree-like class hierarchy.
Tags: Class Hierarchy, habitat, land-cover, land-use, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, out-of-bag, random forest
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-01-15 14:20

Home Range Tools - A series of function to automate batch home range processing using adehabitatHR package.
Tags: Ecology, home range, spatial, spatial data, spatial methods, spatial point patterns, tracking data

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-11-19 12:16

MODISTools - MODISTools uses the MODIS SOAP Web Service provided by ORNL DAAC for remote retrieval and processing of large subsets of data -- as a batch process -- from NASAs online archive of remotely-sensed data from the MODIS satellites.
Tags: Ecology, data mining, remote sensing

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-08-09 23:53

Movement Analysis - Analysis of trajectory data. Compute home ranges, speed distributions and detect movement patterns based on the Brownian bridge movement model.
Tags: Ecology, brownian bridge, ecological models, movement, spatial data, spatio-temporal, trajectory

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-04-09 16:55

Movement Modeling Using CTMCs - The ctmcMove package facilitates modeling animal movement within a continuous-time discrete-space Markov chain (CTMC) framework.
Tags: Ecology, ecology, movement
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-10-13 10:29

NWFSC assessment code - Fishery stock assessment tools used at the Northwest Fishery Science Center (NWFSC) of NOAA. Code for the analysis of survey and fishery data.
Tags: fishery survey, NWFSC, Bioinformatics & Biostatistics, Biostatistics, Ecology, Fisheries

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-01-04 22:44

NullSens - Partitioning Abiotic and Biotic Contributions to Community Variation
Tags: Ecology, Multivariate Analysis, Multivariate Regression, bioinformatics, community ecology, community null model, ecological Inference, ecological models, ecology, linear models, model estimation, model performance, molecular ecology, multivariate regression, nonparametric, null model, parametric model, permutation tests, prediction, regression, robust statistics, simulations, spatial regression, spatio-temporal statistics, species abundance model, species distributions, statistical inference, variance partitioning
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-05 19:49

ODE Solvers Compiled On-Demand - The odeintr package generates compiled ODE solvers on-demand. It uses the Boost odeint library and Rcpp.
Tags: C++, Ecology, Economics, Fast, Fisheries, Forestry, HPC, ODE, R, Rcpp, dynamic systems, ecological models, ordinary differential equations, simulation, solver
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-05-06 21:14

RNetLogo - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
Tags: agent-based Model, Animal, Artificial Neural Network, Ecology, Economics, Fisheries, R, dynamic systems, individual-based models, individual-based-model, political analysis, population dynamics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-08-19 15:59

SoilR - The objective of this project is the development of an R package for modeling soil organic matter decomposition. The package contains a collection of different functions commonly used to represent soil organic matter dynamics.
Tags: Ecology, ODE, dynamic systems, ecological models, ecology, simulation, soil
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-01-17 15:38

35 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
Thanks to:
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