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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

8 projects in result set.
Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, R-Forge, Whole-genome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-02 00:51

Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
Tags: Bioinformatics, Copy number variant, Copynumber, break detection, change detection

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-11-27 16:51

EBS - EBS is an R package for the Exact Bayesian Segmentation of profiles. Exploring the segmentation space, it computes posterior probabilities of quantities such as change-point localization, and proposes an efficient criterion for the choice of K.
Tags: Bayesian, Copynumber, Sequence analysis, break detection
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-05-29 15:59

Joint segmentation [MOVED TO GITHUB] - This package implements functions to quickly segment multivariate signals into piecewise constant profiles. Typical application: joint segmentation of DNA copy number signals obtained from Single Nucleotide Polymorphism microarrays in cancer studies.
Tags: Bioinformatics, CNV, Cancer, Copynumber, biostatistics, break detection, high dimentional data
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-01-04 20:37

Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS). Packages in this project: PSCBS.
Tags: Cancer, Copynumber, DNA, Genetics, QC, SNP, bioinformatics, segmentation

Activity Percentile: 0
Activity Ranking: 0
Registered: 2009-10-20 01:21

Patchwork - Allele-specific Copy-number analysis for whole-genome sequenced data in CompleteGenomics or BAM format.
Tags: Copynumber, Whole-genome, Cancer, R, Visualization, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-10-31 13:53

SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
Tags: Copy number variant, Copynumber, break detection, change detection, optimization, segmentation

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-11-27 16:58

Segmentor3IsBack - Segmentor3IsBack is an R package for the optimal and fast segmentation of data-sets with respect to the log-likelihood loss. The main code has been developed in C++ in a versatile manner, and embeded in an R package.
Tags: Copynumber, Sequence analysis, break detection, change detection, likelihood, optimization
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-05-24 16:38

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