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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

11 projects in result set.
Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, R-Forge, Whole-genome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-02 00:51

FNTD - Routines to analyze images from Al2O3:C,Mg-based fluorescent nuclear track detectors in ion-beam research. As from 9/17(15, the development has moved to github (https://github.com/FNTD) & R-forge is updated with (relatively) stable versions.
Tags: Medical Physics, Radiotherapy, Microscopy, Cancer, Java

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-07-04 07:57

Finite Mixure of AFT and FMR models - FMRS package provides estimation and variable selection in Finite Mixture of Accelerated Failure Time Regression (FMAFTR) and Finite Mixture of Regression (FMR) models with a large number of covariates and/or right censoring and heterogeneous structure.
Tags: Bioinformatics, Biostatistics, C++, Cancer, Medical Science, Mixture, Next generation Sequencing, R, Regression, Statistics, lasso, model estimation, model selection, penalized regression, regularization, survival, tuning parameters, variable selection

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-03-07 02:31

Joint segmentation [MOVED TO GITHUB] - This package implements functions to quickly segment multivariate signals into piecewise constant profiles. Typical application: joint segmentation of DNA copy number signals obtained from Single Nucleotide Polymorphism microarrays in cancer studies.
Tags: Bioinformatics, CNV, Cancer, Copynumber, biostatistics, break detection, high dimentional data
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-01-04 20:37

Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS). Packages in this project: PSCBS.
Tags: Cancer, Copynumber, DNA, Genetics, QC, SNP, bioinformatics, segmentation

Activity Percentile: 0
Activity Ranking: 0
Registered: 2009-10-20 01:21

Patchwork - Allele-specific Copy-number analysis for whole-genome sequenced data in CompleteGenomics or BAM format.
Tags: Copynumber, Whole-genome, Cancer, R, Visualization, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-10-31 13:53

Projections using Bayesian APC model - Package implementing Bayesian age-period-cohort models with the focus on projections. BAPC generates age-specific and age-standardized projected rates and predictive distributions.
Tags: Bayesian, Biostatistics, Cancer, R-INLA, epidemiology, forecasting, prediction, projections
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-03-24 15:10

UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model.
Tags: Bioinformatics, Cancer, Gene expression, bioinformatics, gene expression, simulation, simulations, synthetic dataset

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-03 16:37

bootFS - bootFS is a convenient wrapper to multiple methods for two-class or multi-class classification and feature selection in high-throughput omics-data. It is designed to translate individual feature sets into biologically meaningful and robust biomarkers.
Tags: Cancer, Classification, classification, feature selection

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-09-12 10:13

libamtrack - This package is the R interface to the open-source, ANSI C library libamtrack (http://libamtrack.dkfz.org). It provides computational routines for research in proton and ion beam therapy.
Tags: Medical Physics, Radiotherapy, Cancer

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-06-28 12:14

surroSurv - The surroSurv package allows evaluating a failure-time surrogate endpoint. The package implements the 2-step correlation approach described by Burzykowski et al (JRSS-C 2001), with Clayton, Plackett and Hougaard copulas at first step.
Tags: copula, surrogate, randomized clinical trials, cancer, survival, Cancer

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-02-19 09:44

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