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Revision 2087 - Directory Listing
Modified Sat Aug 12 17:43:35 2017 UTC (3 months, 1 week ago) by jeanlobry
I'd like so much to add this in public domain since according elsevir I can not access my own productions. Shame on you

Revision 2086 - Directory Listing
Modified Fri Aug 4 06:48:30 2017 UTC (3 months, 2 weeks ago) by jeanlobry
sentence too long shotened

Revision 2085 - Directory Listing
Modified Thu Aug 3 19:59:12 2017 UTC (3 months, 2 weeks ago) by jeanlobry
update 3.4-5

Revision 2084 - Directory Listing
Modified Thu Aug 3 19:09:44 2017 UTC (3 months, 2 weeks ago) by jeanlobry
brand new index

Revision 2083 - Directory Listing
Modified Thu Aug 3 18:56:01 2017 UTC (3 months, 2 weeks ago) by jeanlobry
update 3.4-5

Revision 2082 - Directory Listing
Modified Thu Aug 3 17:57:18 2017 UTC (3 months, 2 weeks ago) by jeanlobry
new Rlogo

Revision 2081 - Directory Listing
Modified Wed Aug 2 19:49:52 2017 UTC (3 months, 2 weeks ago) by jeanlobry
adding some time from CRAN

Revision 2080 - Directory Listing
Modified Wed Aug 2 17:33:03 2017 UTC (3 months, 2 weeks ago) by jeanlobry
wayback machine screenshot

Revision 2079 - Directory Listing
Modified Tue Aug 1 17:43:06 2017 UTC (3 months, 3 weeks ago) by jeanlobry
release 3.4-5 on CRAN

Revision 2077 - Directory Listing
Modified Tue Aug 1 06:32:01 2017 UTC (3 months, 3 weeks ago) by jeanlobry
 

Revision 2074 - Directory Listing
Modified Mon Jul 31 10:53:47 2017 UTC (3 months, 3 weeks ago) by jeanlobry
 

Revision 2071 - Directory Listing
Modified Mon Jul 31 06:46:18 2017 UTC (3 months, 3 weeks ago) by jeanlobry
 

Revision 2063 - Directory Listing
Modified Mon Jul 17 07:23:44 2017 UTC (4 months ago) by jeanlobry
 

Revision 2056 - Directory Listing
Modified Tue Jul 4 11:31:07 2017 UTC (4 months, 2 weeks ago) by jeanlobry
new test file for kaks

Revision 2050 - Directory Listing
Modified Tue Jul 4 10:26:06 2017 UTC (4 months, 2 weeks ago) by jeanlobry
read.alignment can now handle legacy fasta format

Revision 2048 - Directory Listing
Modified Mon Jul 3 17:38:49 2017 UTC (4 months, 2 weeks ago) by jeanlobry
adding the new argument rmgap to kaks

Revision 2043 - Directory Listing
Modified Mon Jul 3 13:24:10 2017 UTC (4 months, 2 weeks ago) by jeanlobry
nonfinite kaks release note

Revision 2034 - Directory Listing
Modified Wed Apr 5 12:18:32 2017 UTC (7 months, 2 weeks ago) by jeanlobry
fixing release version number

Revision 2032 - Directory Listing
Modified Wed Apr 5 08:56:50 2017 UTC (7 months, 2 weeks ago) by jeanlobry
ducumenting release 3.3-5

Revision 2028 - Directory Listing
Modified Wed Apr 5 08:07:41 2017 UTC (7 months, 2 weeks ago) by jeanlobry
to fix invalid URL

Revision 2026 - Directory Listing
Modified Fri Oct 14 16:34:27 2016 UTC (13 months, 1 week ago) by jeanlobry
fixing a bug in dotchart.uco

Revision 2021 - Directory Listing
Modified Thu Oct 13 11:40:15 2016 UTC (13 months, 1 week ago) by jeanlobry
figure polish

Revision 2019 - Directory Listing
Modified Wed Oct 12 17:15:49 2016 UTC (13 months, 1 week ago) by jeanlobry
ajout modifs SPE

Revision 2014 - Directory Listing
Modified Sun Oct 9 18:36:14 2016 UTC (13 months, 1 week ago) by jeanlobry
new dataset

Revision 2013 - Directory Listing
Modified Sun Oct 9 18:35:34 2016 UTC (13 months, 1 week ago) by jeanlobry
new dataset

Revision 2009 - Directory Listing
Modified Sun Oct 9 11:48:03 2016 UTC (13 months, 1 week ago) by jeanlobry
new refs

Revision 2008 - Directory Listing
Modified Sun Oct 9 11:47:33 2016 UTC (13 months, 1 week ago) by jeanlobry
new gcT dataset

Revision 2001 - Directory Listing
Modified Wed Oct 5 19:11:22 2016 UTC (13 months, 2 weeks ago) by jeanlobry
link to genetic codes

Revision 2000 - Directory Listing
Modified Wed Oct 5 19:08:08 2016 UTC (13 months, 2 weeks ago) by jeanlobry
with 3 new genetic codes

Revision 1995 - Directory Listing
Modified Wed Oct 5 17:09:16 2016 UTC (13 months, 2 weeks ago) by jeanlobry
 

Revision 1992 - Directory Listing
Modified Thu Sep 1 13:24:11 2016 UTC (14 months, 3 weeks ago) by simonpenel
improved read.alignment function thanks  to Matthew Krause

Revision 1987 - Directory Listing
Modified Mon Jul 18 17:11:46 2016 UTC (16 months ago) by jeanlobry
typo: not -> now

Revision 1985 - Directory Listing
Modified Mon Jul 18 16:31:20 2016 UTC (16 months ago) by jeanlobry
in memoriam 2016-07-14 release

Revision 1982 - Directory Listing
Modified Tue Jul 12 19:19:54 2016 UTC (16 months, 1 week ago) by jeanlobry
D-loop example

Revision 1981 - Directory Listing
Modified Tue Jul 12 19:04:38 2016 UTC (16 months, 1 week ago) by jeanlobry
D-loop example

Revision 1975 - Directory Listing
Modified Fri Jul 1 11:57:25 2016 UTC (16 months, 3 weeks ago) by jeanlobry
images added

Revision 1964 - Directory Listing
Modified Thu Jun 30 12:53:30 2016 UTC (16 months, 3 weeks ago) by jeanlobry
fixing URL

Revision 1962 - Directory Listing
Modified Thu Jun 30 12:41:15 2016 UTC (16 months, 3 weeks ago) by jeanlobry
adding FAQ

Revision 1961 - Directory Listing
Modified Thu Jun 30 12:39:03 2016 UTC (16 months, 3 weeks ago) by jeanlobry
adding FAQ

Revision 1960 - Directory Listing
Modified Wed Jun 22 18:32:19 2016 UTC (17 months ago) by jeanlobry
adding a direct link to the read.fasta doc examples

Revision 1959 - Directory Listing
Modified Wed Jun 22 18:08:48 2016 UTC (17 months ago) by jeanlobry
adding a part of the maual for the front end website

Revision 1958 - Directory Listing
Modified Tue Jun 21 12:42:50 2016 UTC (17 months ago) by jeanlobry
gb2fasta now uses a local file example

Revision 1955 - Directory Listing
Modified Tue Jun 21 09:01:47 2016 UTC (17 months ago) by jeanlobry
adding a direct link to the download section

Revision 1950 - Directory Listing
Modified Fri Jun 17 19:50:20 2016 UTC (17 months ago) by jeanlobry
Documenting the fixing of the spurious warning in ComputePI

Revision 1948 - Directory Listing
Modified Fri Jun 17 19:20:21 2016 UTC (17 months ago) by jeanlobry
Explaining the new release number scheme

Revision 1945 - Directory Listing
Modified Tue Jun 7 13:54:18 2016 UTC (17 months, 2 weeks ago) by simonpenel
Updating release notes

Revision 1942 - Directory Listing
Modified Mon Jun 6 13:25:42 2016 UTC (17 months, 2 weeks ago) by simonpenel
Updating release notes

Revision 1941 - Directory Listing
Modified Mon Jun 6 13:12:07 2016 UTC (17 months, 2 weeks ago) by simonpenel
Updating release notes

Revision 1940 - Directory Listing
Modified Mon Jun 6 12:42:12 2016 UTC (17 months, 2 weeks ago) by simonpenel
Updating release notes

Revision 1939 - Directory Listing
Modified Mon Jun 6 12:32:58 2016 UTC (17 months, 2 weeks ago) by simonpenel
Updating release notes

Revision 1926 - Directory Listing
Modified Fri Jun 3 14:55:59 2016 UTC (17 months, 2 weeks ago) by simonpenel
Updating release notes

Revision 1925 - Directory Listing
Modified Fri Jun 3 14:07:22 2016 UTC (17 months, 2 weeks ago) by simonpenel
Updating release notes

Revision 1923 - Directory Listing
Modified Fri Jun 3 13:52:49 2016 UTC (17 months, 2 weeks ago) by simonpenel
Updating release notes

Revision 1917 - Directory Listing
Modified Fri Jun 3 12:51:39 2016 UTC (17 months, 2 weeks ago) by simonpenel
Updating release notes

Revision 1914 - Directory Listing
Modified Fri Jun 3 12:13:04 2016 UTC (17 months, 2 weeks ago) by simonpenel
Updating release notes

Revision 1913 - Directory Listing
Modified Fri Jun 3 09:04:36 2016 UTC (17 months, 2 weeks ago) by simonpenel
comp function bug fixed

Revision 1911 - Directory Listing
Modified Thu Jun 2 16:28:38 2016 UTC (17 months, 2 weeks ago) by jeanlobry
wrong version number in cover

Revision 1910 - Directory Listing
Modified Thu Jun 2 16:25:54 2016 UTC (17 months, 2 weeks ago) by jeanlobry
updating cover to 3.1-5

Revision 1909 - Directory Listing
Modified Thu Jun 2 15:10:58 2016 UTC (17 months, 2 weeks ago) by jeanlobry
A new version at least

Revision 1908 - Directory Listing
Modified Thu Jun 2 15:10:02 2016 UTC (17 months, 2 weeks ago) by jeanlobry
A new version at least

Revision 1907 - Directory Listing
Modified Thu Jun 2 15:09:07 2016 UTC (17 months, 2 weeks ago) by jeanlobry
A new version at least

Revision 1906 - Directory Listing
Modified Thu Jun 2 15:03:01 2016 UTC (17 months, 2 weeks ago) by jeanlobry
UTF-8 fixes

Revision 1905 - Directory Listing
Modified Thu Jun 2 14:47:55 2016 UTC (17 months, 2 weeks ago) by jeanlobry
documentation bug in rho() fixed

Revision 1904 - Directory Listing
Modified Thu Jun 2 14:41:33 2016 UTC (17 months, 2 weeks ago) by jeanlobry
documentation bug in rho() fixed

Revision 1903 - Directory Listing
Modified Thu Jun 2 14:37:14 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Ref Karlin 1994

Revision 1901 - Directory Listing
Modified Thu Jun 2 14:11:38 2016 UTC (17 months, 2 weeks ago) by jeanlobry
using gzcon in read.fasta

Revision 1900 - Directory Listing
Modified Thu Jun 2 14:01:59 2016 UTC (17 months, 2 weeks ago) by jeanlobry
use of gzcon for read.fasta

Revision 1898 - Directory Listing
Modified Thu Jun 2 12:43:37 2016 UTC (17 months, 2 weeks ago) by jeanlobry
Two new figures

Revision 1897 - Directory Listing
Modified Thu Jun 2 12:30:31 2016 UTC (17 months, 2 weeks ago) by jeanlobry
resizing

Revision 1896 - Directory Listing
Modified Thu Jun 2 12:08:35 2016 UTC (17 months, 2 weeks ago) by jeanlobry
screenshot of figure 1 from oriloc paper

Revision 1895 - Directory Listing
Modified Thu Jun 2 12:00:10 2016 UTC (17 months, 2 weeks ago) by jeanlobry
using ct.fasta.gz

Revision 1889 - Directory Listing
Modified Thu Jun 2 10:45:22 2016 UTC (17 months, 2 weeks ago) by jeanlobry
to fix the getLength(ec999) bug repported by Haruo Suzuki

Revision 1887 - Directory Listing
Modified Thu Jun 2 09:26:12 2016 UTC (17 months, 2 weeks ago) by jeanlobry
updating file names

Revision 1866 - Directory Listing
Modified Wed Jun 1 16:02:10 2016 UTC (17 months, 3 weeks ago) by jeanlobry
adding the gencodes file

Revision 1865 - Directory Listing
Modified Wed Jun 1 15:59:08 2016 UTC (17 months, 3 weeks ago) by jeanlobry
compilation check

Revision 1864 - Directory Listing
Modified Wed Jun 1 15:26:53 2016 UTC (17 months, 3 weeks ago) by jeanlobry
compilation check

Revision 1863 - Directory Listing
Modified Wed Jun 1 15:24:15 2016 UTC (17 months, 3 weeks ago) by jeanlobry
adding the fdl file

Revision 1862 - Directory Listing
Modified Wed Jun 1 15:24:13 2016 UTC (17 months, 3 weeks ago) by simonpenel
Now working without global environment stuff

Revision 1861 - Directory Listing
Modified Wed Jun 1 15:22:45 2016 UTC (17 months, 3 weeks ago) by jeanlobry
just compiling again

Revision 1860 - Directory Listing
Modified Wed Jun 1 15:18:16 2016 UTC (17 months, 3 weeks ago) by jeanlobry
adding the FAQ file

Revision 1859 - Directory Listing
Modified Wed Jun 1 15:14:25 2016 UTC (17 months, 3 weeks ago) by jeanlobry
query bugs fixed now

Revision 1858 - Directory Listing
Modified Wed Jun 1 14:50:22 2016 UTC (17 months, 3 weeks ago) by jeanlobry
adding nonparastats file

Revision 1857 - Directory Listing
Modified Wed Jun 1 14:48:58 2016 UTC (17 months, 3 weeks ago) by jeanlobry
bug in query fixed

Revision 1856 - Directory Listing
Modified Wed Jun 1 14:44:49 2016 UTC (17 months, 3 weeks ago) by jeanlobry
adding multivariate file

Revision 1855 - Directory Listing
Modified Wed Jun 1 14:44:00 2016 UTC (17 months, 3 weeks ago) by jeanlobry
Compilation update

Revision 1854 - Directory Listing
Modified Wed Jun 1 14:30:42 2016 UTC (17 months, 3 weeks ago) by jeanlobry
Adding querylang and dealseq

Revision 1853 - Directory Listing
Modified Wed Jun 1 14:29:51 2016 UTC (17 months, 3 weeks ago) by jeanlobry
Just a compilation update

Revision 1852 - Directory Listing
Modified Wed Jun 1 14:08:33 2016 UTC (17 months, 3 weeks ago) by jeanlobry
Now examples run correctly

Revision 1851 - Directory Listing
Modified Wed Jun 1 12:36:46 2016 UTC (17 months, 3 weeks ago) by jeanlobry
showing closure issue

Revision 1850 - Directory Listing
Modified Tue May 31 19:31:19 2016 UTC (17 months, 3 weeks ago) by jeanlobry
Now getseqacnuc.tex is included

Revision 1849 - Directory Listing
Modified Tue May 31 19:29:18 2016 UTC (17 months, 3 weeks ago) by jeanlobry
major update so that it works

Revision 1848 - Directory Listing
Modified Tue May 31 16:20:47 2016 UTC (17 months, 3 weeks ago) by jeanlobry
taxobagen bank is dead

Revision 1847 - Directory Listing
Modified Tue May 31 16:14:21 2016 UTC (17 months, 3 weeks ago) by jeanlobry
Divide and conquer the mainmatter

Revision 1846 - Directory Listing
Modified Tue May 31 16:04:42 2016 UTC (17 months, 3 weeks ago) by jeanlobry
UTF-8 version

Revision 1845 - Directory Listing
Modified Tue May 31 15:56:44 2016 UTC (17 months, 3 weeks ago) by jeanlobry
version UTF-8

Revision 1844 - Directory Listing
Modified Tue May 31 15:47:21 2016 UTC (17 months, 3 weeks ago) by jeanlobry
version UTF-8

Revision 1843 - Directory Listing
Modified Tue May 31 15:46:09 2016 UTC (17 months, 3 weeks ago) by jeanlobry
UTF-8 encoding now

Revision 1842 - Directory Listing
Modified Tue May 31 15:44:58 2016 UTC (17 months, 3 weeks ago) by jeanlobry
mini qui marche

Revision 1841 - Directory Listing
Modified Tue May 31 13:28:59 2016 UTC (17 months, 3 weeks ago) by jeanlobry
 

Revision 1840 - Directory Listing
Modified Tue May 31 13:16:25 2016 UTC (17 months, 3 weeks ago) by jeanlobry
https au lieu de http

Revision 1839 - Directory Listing
Modified Tue May 31 13:13:09 2016 UTC (17 months, 3 weeks ago) by jeanlobry
https au lieu de http

Revision 1814 - Directory Listing
Modified Wed Jun 11 13:49:22 2014 UTC (3 years, 5 months ago) by jeanlobry
revert: align not valid in XHTML

Revision 1813 - Directory Listing
Modified Wed Jun 11 13:36:35 2014 UTC (3 years, 5 months ago) by jeanlobry
align image on left

Revision 1812 - Directory Listing
Modified Wed Jun 11 09:44:17 2014 UTC (3 years, 5 months ago) by jeanlobry
manual snapshot and link to releasenotes.pdf and deletion of obsolete stuff

Revision 1811 - Directory Listing
Modified Wed Jun 11 09:19:18 2014 UTC (3 years, 5 months ago) by jeanlobry
generic cover image

Revision 1810 - Directory Listing
Modified Wed Jun 11 09:12:38 2014 UTC (3 years, 5 months ago) by jeanlobry
add pdf for online doc

Revision 1809 - Directory Listing
Modified Wed Jun 11 09:11:49 2014 UTC (3 years, 5 months ago) by jeanlobry
NS and NK are now documented

Revision 1808 - Directory Listing
Modified Wed Jun 11 09:06:27 2014 UTC (3 years, 5 months ago) by jeanlobry
NS and NK are now documented

Revision 1807 - Directory Listing
Modified Wed Jun 11 09:02:13 2014 UTC (3 years, 5 months ago) by jeanlobry
add pdf for online doc

Revision 1806 - Directory Listing
Modified Wed Jun 11 09:01:19 2014 UTC (3 years, 5 months ago) by jeanlobry
NS and NK are now documented

Revision 1805 - Directory Listing
Modified Tue Jun 10 20:30:31 2014 UTC (3 years, 5 months ago) by jeanlobry
NS and NK overdue update in doc done

Revision 1803 - Directory Listing
Modified Fri Jun 6 19:41:26 2014 UTC (3 years, 5 months ago) by jeanlobry
compil 3.0-11

Revision 1802 - Directory Listing
Modified Fri Jun 6 19:29:31 2014 UTC (3 years, 5 months ago) by jeanlobry
Mouse chromosome 1 now as a single contig in Ensembl

Revision 1801 - Directory Listing
Modified Fri Jun 6 19:27:53 2014 UTC (3 years, 5 months ago) by jeanlobry
Mouse chromosome 1 now as a single contig in Ensembl

Revision 1800 - Directory Listing
Modified Fri Jun 6 18:09:12 2014 UTC (3 years, 5 months ago) by jeanlobry
within() and between() that are now deprecated in the ade4 package were replaced by wca() and bca()

Revision 1798 - Directory Listing
Modified Fri Jun 6 17:51:32 2014 UTC (3 years, 5 months ago) by jeanlobry
broken default link fixed in get.db.growth()

Revision 1797 - Directory Listing
Modified Fri Jun 6 17:38:39 2014 UTC (3 years, 5 months ago) by jeanlobry
compil 3.0-11 and url fix for db growth

Revision 1794 - Directory Listing
Modified Fri Jun 6 16:48:21 2014 UTC (3 years, 5 months ago) by jeanlobry
compil 3.0-11

Revision 1793 - Directory Listing
Modified Fri Jun 6 16:44:13 2014 UTC (3 years, 5 months ago) by jeanlobry
compil 3.0-11

Revision 1792 - Directory Listing
Modified Fri Jun 6 16:20:57 2014 UTC (3 years, 5 months ago) by jeanlobry
compil 3.0-11

Revision 1791 - Directory Listing
Modified Fri Jun 6 11:51:19 2014 UTC (3 years, 5 months ago) by jeanlobry
compil 3.0-11

Revision 1790 - Directory Listing
Modified Fri Jun 6 11:50:09 2014 UTC (3 years, 5 months ago) by jeanlobry
bug fixed to get current file name

Revision 1789 - Directory Listing
Modified Fri Jun 6 11:32:53 2014 UTC (3 years, 5 months ago) by jeanlobry
book.bib no more distributed with the seqinr package but still on SVN repos

Revision 1788 - Directory Listing
Modified Fri Jun 6 11:22:53 2014 UTC (3 years, 5 months ago) by jeanlobry
added by RStudio I guess

Revision 1787 - Directory Listing
Modified Fri Jun 6 11:20:20 2014 UTC (3 years, 5 months ago) by jeanlobry
compil 3.0-11

Revision 1785 - Directory Listing
Modified Fri Jun 6 11:13:13 2014 UTC (3 years, 5 months ago) by jeanlobry
broken links fixed

Revision 1784 - Directory Listing
Modified Fri Jun 6 10:58:47 2014 UTC (3 years, 5 months ago) by jeanlobry
path fixed to allow compilation with new location of the sources

Revision 1783 - Directory Listing
Modified Fri Jun 6 10:56:27 2014 UTC (3 years, 5 months ago) by jeanlobry
add an as.string argument so that write.fasta can handle sequences when provided as strings

Revision 1782 - Directory Listing
Modified Fri Jun 6 10:38:23 2014 UTC (3 years, 5 months ago) by jeanlobry
add an as.string argument so that write.fasta can handle sequences when provided as strings

Revision 1779 - Directory Listing
Modified Wed Jun 4 13:33:57 2014 UTC (3 years, 5 months ago) by jeanlobry
URL link to repository fixed

Revision 1758 - Directory Listing
Modified Tue Apr 5 10:05:16 2011 UTC (6 years, 7 months ago) by simonpenel
The sequence file ATH1_pep_cm_20040228.fasta is only used for vignette building thus it has been moved into
the www directory. The vignette seqinr_2_0-7.pdf has been removed since it  is already present in the www
directory.

Revision 1756 - Directory Listing
Modified Thu Mar 24 16:38:34 2011 UTC (6 years, 8 months ago) by simonpenel
Directory pkg/inst/doc/src has been moved to www/src in order to diminue data size

Revision 1712 - Directory Listing
Modified Sun Nov 15 11:02:36 2009 UTC (8 years ago) by lobry
doc 2.0-7

Revision 1700 - Directory Listing
Modified Thu Nov 5 14:12:34 2009 UTC (8 years ago) by lobry
version 2.0-7 of manual

Revision 1699 - Directory Listing
Modified Thu Nov 5 14:09:13 2009 UTC (8 years ago) by lobry
version 2.0-7 of manual

Revision 1610 - Directory Listing
Modified Mon Apr 27 07:21:03 2009 UTC (8 years, 6 months ago) by lobry
new manual

Revision 1601 - Directory Listing
Modified Sun Apr 26 09:00:55 2009 UTC (8 years, 6 months ago) by lobry
new manual version

Revision 1600 - Directory Listing
Modified Sun Apr 26 08:56:30 2009 UTC (8 years, 6 months ago) by lobry
add new version 2.0-3

Revision 1559 - Directory Listing
Modified Thu Feb 12 15:48:35 2009 UTC (8 years, 9 months ago) by simonpenel
Addition of the new vignette

Revision 1541 - Directory Listing
Modified Fri Jan 23 19:27:31 2009 UTC (8 years, 10 months ago) by lobry
2.0-1

Revision 1499 - Directory Listing
Modified Sun Oct 26 19:10:56 2008 UTC (9 years ago) by lobry
new doc 2.0.0

Revision 1457 - Directory Listing
Modified Mon Sep 1 08:21:22 2008 UTC (9 years, 2 months ago) by simonpenel
Tag correction. 

Revision 1456 - Directory Listing
Modified Mon Sep 1 07:46:11 2008 UTC (9 years, 2 months ago) by simonpenel
Addition of the documentation. 

Revision 1453 - Directory Listing
Modified Wed Aug 20 15:44:46 2008 UTC (9 years, 3 months ago) by lobry
Brief warning about the old seqinr web site

Revision 2 - Directory Listing
Modified Wed Jul 30 12:02:20 2008 UTC (9 years, 3 months ago) by simonpenel
Test of svn

Revision 1 - Directory Listing
Added Mon Jun 25 10:38:44 2007 UTC (10 years, 5 months ago) by stefan7th
Email in Readme changed

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