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Revision 927 - Directory Listing
Modified Mon Sep 19 21:09:49 2005 UTC (14 years, 2 months ago) by bates
Fixed a thinko picked up by the compiler

Revision 926 - Directory Listing
Modified Mon Sep 19 21:08:53 2005 UTC (14 years, 2 months ago) by bates
Keep -Wall quiet

Revision 925 - Directory Listing
Modified Mon Sep 19 19:01:31 2005 UTC (14 years, 2 months ago) by maechler
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more  "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

Revision 923 - Directory Listing
Modified Sun Sep 18 23:41:45 2005 UTC (14 years, 2 months ago) by bates
More progress on incorporating CHOLMOD - still not passing CMD check

Revision 922 - Directory Listing
Modified Sun Sep 18 16:33:54 2005 UTC (14 years, 2 months ago) by bates
Added CHOLMOD-based C functions.  Still need methods defined in R and some error checking

Revision 921 - Directory Listing
Modified Sat Sep 17 14:27:41 2005 UTC (14 years, 2 months ago) by bates
Sparse Matrix methods using CHOLMOD inside ifdef blocks

Revision 920 - Directory Listing
Modified Fri Sep 16 19:36:51 2005 UTC (14 years, 2 months ago) by bates
Some CHOLMOD utilities

Revision 919 - Directory Listing
Modified Fri Sep 16 17:27:06 2005 UTC (14 years, 2 months ago) by maechler
new compressed_non_0_ij()

Revision 917 - Directory Listing
Modified Thu Sep 15 18:03:55 2005 UTC (14 years, 2 months ago) by bates
Document changes

Revision 916 - Directory Listing
Modified Thu Sep 15 17:52:59 2005 UTC (14 years, 2 months ago) by bates
Actually needed the Check module

Revision 915 - Directory Listing
Modified Thu Sep 15 17:45:23 2005 UTC (14 years, 2 months ago) by bates
Removing unneeded directories

Revision 914 - Directory Listing
Modified Thu Sep 15 17:41:38 2005 UTC (14 years, 2 months ago) by bates
Removing unneeded directories

Revision 913 - Directory Listing
Modified Thu Sep 15 17:38:18 2005 UTC (14 years, 2 months ago) by bates
No need for xerbla in R package

Revision 912 - Directory Listing
Modified Thu Sep 15 14:53:55 2005 UTC (14 years, 2 months ago) by bates
Adding CHOLMOD and related source packages

Revision 903 - Directory Listing
Modified Wed Sep 7 20:43:18 2005 UTC (14 years, 3 months ago) by bates
Remove unnecessary declaration

Revision 901 - Directory Listing
Modified Tue Sep 6 01:26:11 2005 UTC (14 years, 3 months ago) by bates
Add "start" argument to lmer

Revision 896 - Directory Listing
Modified Sat Sep 3 21:57:18 2005 UTC (14 years, 3 months ago) by maechler
more consistency in validation checks

Revision 895 - Directory Listing
Modified Sat Sep 3 21:56:35 2005 UTC (14 years, 3 months ago) by maechler
cosmetic, comment

Revision 894 - Directory Listing
Modified Sat Sep 3 21:55:38 2005 UTC (14 years, 3 months ago) by maechler
comments

Revision 890 - Directory Listing
Modified Thu Sep 1 17:18:08 2005 UTC (14 years, 3 months ago) by maechler
add triangularMatrix_validate and symmetric* to C code and make (re!)use of it - not quite everywhere?

Revision 888 - Directory Listing
Modified Thu Sep 1 13:46:21 2005 UTC (14 years, 3 months ago) by bates
New simulate method for lmer objects

Revision 885 - Directory Listing
Modified Tue Aug 30 20:54:55 2005 UTC (14 years, 3 months ago) by maechler
fix typo in non-validity text

Revision 883 - Directory Listing
Modified Tue Aug 30 14:38:04 2005 UTC (14 years, 3 months ago) by bates
Doxygen documentation for C function

Revision 879 - Directory Listing
Modified Tue Aug 30 14:35:05 2005 UTC (14 years, 3 months ago) by bates
Added simulate generic and method

Revision 878 - Directory Listing
Modified Sun Aug 28 13:57:39 2005 UTC (14 years, 3 months ago) by bates
Add simulate method for lmer

Revision 876 - Directory Listing
Modified Sat Aug 27 22:50:57 2005 UTC (14 years, 3 months ago) by bates
clean up conversion of graphNEL to sparseMatrix

Revision 874 - Directory Listing
Modified Sat Aug 27 21:27:51 2005 UTC (14 years, 3 months ago) by maechler
prepare graphNEL coercion both for directed and undir.

Revision 866 - Directory Listing
Modified Fri Aug 19 16:58:26 2005 UTC (14 years, 3 months ago) by maechler
new lcrc_to_matrix code

Revision 862 - Directory Listing
Modified Thu Aug 18 21:31:07 2005 UTC (14 years, 3 months ago) by bates
Coercion method for graphNEL to sparseMatrix class

Revision 852 - Directory Listing
Modified Tue Aug 16 17:52:16 2005 UTC (14 years, 3 months ago) by bates
Move readHB and readMM to R code and allow the use of connections

Revision 846 - Directory Listing
Modified Wed Aug 10 22:08:35 2005 UTC (14 years, 4 months ago) by bates
Release 0.98-3

Revision 841 - Directory Listing
Modified Tue Aug 9 14:21:32 2005 UTC (14 years, 4 months ago) by bates
Remove second declaration of IOHBterminate

Revision 840 - Directory Listing
Modified Mon Aug 8 16:16:17 2005 UTC (14 years, 4 months ago) by bates
Avoid problems with trying to write to string constants.

Revision 838 - Directory Listing
Modified Mon Aug 8 14:59:38 2005 UTC (14 years, 4 months ago) by bates
writeHarwellBoeing and writeMatrixMarket routines

Revision 835 - Directory Listing
Modified Mon Aug 8 13:33:18 2005 UTC (14 years, 4 months ago) by bates
Add writeHB and writeMM methods and generic

Revision 825 - Directory Listing
Modified Sun Aug 7 15:22:33 2005 UTC (14 years, 4 months ago) by bates
Harwell-Boeing and MatrixMarket formats

Revision 824 - Directory Listing
Modified Sat Aug 6 20:01:51 2005 UTC (14 years, 4 months ago) by bates
Allow mcmcsamp on transformed parameters

Revision 820 - Directory Listing
Modified Wed Jul 27 23:07:04 2005 UTC (14 years, 4 months ago) by bates
Version 0.98-1

Revision 818 - Directory Listing
Modified Tue Jul 26 22:46:14 2005 UTC (14 years, 4 months ago) by bates
updates on lmer_MCMCsamp

Revision 816 - Directory Listing
Modified Tue Jul 26 12:36:10 2005 UTC (14 years, 4 months ago) by bates
Working version of lmer_MCMCsamp - may have chisq in wrong place when sampling sigmasqr

Revision 815 - Directory Listing
Modified Sun Jul 24 23:53:40 2005 UTC (14 years, 4 months ago) by bates
Added lmer_MCMCsamp to the C sources

Revision 814 - Directory Listing
Modified Thu Jul 21 23:05:52 2005 UTC (14 years, 4 months ago) by bates
Working version of the glmmMCMC producing an mcmc object

Revision 813 - Directory Listing
Modified Thu Jul 21 16:41:42 2005 UTC (14 years, 4 months ago) by bates
New sampling for glmerMCMC but intermediates are not appropriately PROTECTed

Revision 812 - Directory Listing
Modified Thu Jul 21 14:59:04 2005 UTC (14 years, 4 months ago) by bates
Added an rWishart function, which should later be moved to the stats package

Revision 808 - Directory Listing
Modified Mon Jul 11 15:05:40 2005 UTC (14 years, 5 months ago) by bates
Release 0.97-3

Revision 806 - Directory Listing
Modified Fri Jul 8 15:38:43 2005 UTC (14 years, 5 months ago) by bates
Preliminary version of glmmMCMC

Revision 805 - Directory Listing
Modified Fri Jul 8 03:47:35 2005 UTC (14 years, 5 months ago) by bates
More work on glmer_ranef_update - still not complete

Revision 804 - Directory Listing
Modified Thu Jul 7 20:05:47 2005 UTC (14 years, 5 months ago) by bates
Preparing for glmmMCMC

Revision 803 - Directory Listing
Modified Thu Jul 7 19:09:49 2005 UTC (14 years, 5 months ago) by murdoch
Get include files from R_HOME/include in Windows

Revision 802 - Directory Listing
Modified Wed Jul 6 23:55:39 2005 UTC (14 years, 5 months ago) by bates
got glmer_fixed_update working

Revision 801 - Directory Listing
Modified Wed Jul 6 16:24:33 2005 UTC (14 years, 5 months ago) by bates
Updates for release 0.97-2

Revision 800 - Directory Listing
Modified Tue Jul 5 00:38:09 2005 UTC (14 years, 5 months ago) by bates
Clean up

Revision 796 - Directory Listing
Modified Mon Jul 4 14:57:28 2005 UTC (14 years, 5 months ago) by bates
Added utilities vecSum and vecIncrement

Revision 795 - Directory Listing
Modified Mon Jul 4 14:56:57 2005 UTC (14 years, 5 months ago) by bates
Added AGQ for glmer class

Revision 790 - Directory Listing
Modified Sat Jul 2 20:57:08 2005 UTC (14 years, 5 months ago) by maechler
emacs-helping comment

Revision 787 - Directory Listing
Modified Thu Jun 30 16:59:12 2005 UTC (14 years, 5 months ago) by bates
Still modifying glmer_devAGQ

Revision 786 - Directory Listing
Modified Tue Jun 28 13:58:41 2005 UTC (14 years, 5 months ago) by bates
Developing AGQ but still not right

Revision 785 - Directory Listing
Modified Sun Jun 26 16:22:56 2005 UTC (14 years, 5 months ago) by bates
Conditional modes now ok for MCMC - still need sampling methods

Revision 784 - Directory Listing
Modified Sun Jun 26 03:42:21 2005 UTC (14 years, 5 months ago) by bates
More work on MCMC (still incomplete)

Revision 783 - Directory Listing
Modified Sun Jun 26 03:41:37 2005 UTC (14 years, 5 months ago) by bates
Reinstate check on number of arguments

Revision 782 - Directory Listing
Modified Fri Jun 24 23:06:33 2005 UTC (14 years, 5 months ago) by bates
Adding MCMC capability (currently incomplete)

Revision 781 - Directory Listing
Modified Fri Jun 24 15:38:43 2005 UTC (14 years, 5 months ago) by bates
Further development on AGQ and MCMC for glmm models

Revision 779 - Directory Listing
Modified Wed Jun 15 15:52:19 2005 UTC (14 years, 5 months ago) by bates
Adding AGQ (but not yet correct)

Revision 778 - Directory Listing
Modified Tue Jun 14 04:05:54 2005 UTC (14 years, 5 months ago) by bates
Non-working version - needs adjustment of deviance by multiplicative factor

Revision 777 - Directory Listing
Modified Tue Jun 14 04:02:57 2005 UTC (14 years, 5 months ago) by bates
release 0.96-2

Revision 776 - Directory Listing
Modified Mon Jun 13 19:45:04 2005 UTC (14 years, 5 months ago) by bates
Setting up for AGQ

Revision 775 - Directory Listing
Modified Mon Jun 13 01:22:28 2005 UTC (14 years, 5 months ago) by bates
Factoring C code in preparation for AGQ

Revision 774 - Directory Listing
Modified Fri Jun 10 18:40:54 2005 UTC (14 years, 6 months ago) by bates
Moving devLaplace calculations to C code

Revision 773 - Directory Listing
Modified Thu Jun 9 18:30:33 2005 UTC (14 years, 6 months ago) by bates
Adding flag to skip fixed-effects terms (for use with generalized linear or nonlinear models)

Revision 772 - Directory Listing
Modified Thu Jun 9 16:57:55 2005 UTC (14 years, 6 months ago) by bates
Prepare for release 0.96-1

Revision 766 - Directory Listing
Modified Tue Jun 7 23:03:34 2005 UTC (14 years, 6 months ago) by bates
Isolating and cleaning up the mer, lmer, and glmer functions

Revision 765 - Directory Listing
Modified Tue Jun 7 23:03:19 2005 UTC (14 years, 6 months ago) by bates
Keep -Wall quiet

Revision 764 - Directory Listing
Modified Mon Jun 6 16:03:07 2005 UTC (14 years, 6 months ago) by bates
Keep -Wall quiet

Revision 762 - Directory Listing
Modified Mon Jun 6 15:52:23 2005 UTC (14 years, 6 months ago) by bates
Keep -Wall quiet

Revision 761 - Directory Listing
Modified Mon Jun 6 15:51:24 2005 UTC (14 years, 6 months ago) by bates
Use mer objects; Replace REML slot by method slot

Revision 758 - Directory Listing
Modified Mon Jun 6 15:46:28 2005 UTC (14 years, 6 months ago) by bates
Fix matrix multiplication methods

Revision 753 - Directory Listing
Modified Sun May 29 02:15:35 2005 UTC (14 years, 6 months ago) by bates
Release 0.95-11

Revision 749 - Directory Listing
Modified Fri May 20 03:17:14 2005 UTC (14 years, 6 months ago) by bates
Release 0.95-10

Revision 748 - Directory Listing
Modified Thu May 19 21:29:33 2005 UTC (14 years, 6 months ago) by deepayan
fixed typos

Revision 747 - Directory Listing
Modified Thu May 19 17:43:42 2005 UTC (14 years, 6 months ago) by bates
Incorrect version but I want to transfer it

Revision 746 - Directory Listing
Modified Wed May 18 17:03:17 2005 UTC (14 years, 6 months ago) by bates
Corrected determination of slot sizes for multiple non-nested grouping factors

Revision 745 - Directory Listing
Modified Tue May 17 18:34:27 2005 UTC (14 years, 6 months ago) by bates
Fold bCrosstab.[ch] into lmer.[ch]

Revision 743 - Directory Listing
Modified Tue May 17 17:45:52 2005 UTC (14 years, 6 months ago) by bates
Fold bCrosstab.[ch] into lmer.[ch]

Revision 742 - Directory Listing
Modified Tue May 17 17:45:24 2005 UTC (14 years, 6 months ago) by bates
Fold bCrosstab.[ch] into lmer.[ch]

Revision 741 - Directory Listing
Modified Tue May 17 17:44:02 2005 UTC (14 years, 6 months ago) by bates
collapse some constructions in the code

Revision 740 - Directory Listing
Modified Tue May 17 17:42:35 2005 UTC (14 years, 6 months ago) by bates
Last update before removing these files

Revision 739 - Directory Listing
Modified Tue May 17 17:42:04 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 738 - Directory Listing
Modified Tue May 17 17:25:31 2005 UTC (14 years, 6 months ago) by bates
Added Matrix_expand_pointers (callable from R) and moved utility for duplicating slots

Revision 737 - Directory Listing
Modified Tue May 17 17:21:38 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 736 - Directory Listing
Modified Tue May 17 17:21:04 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 733 - Directory Listing
Modified Tue May 17 17:18:30 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 732 - Directory Listing
Modified Tue May 17 17:18:14 2005 UTC (14 years, 6 months ago) by bates
Adding logical sparse matrix methods

Revision 728 - Directory Listing
Modified Sat May 14 00:21:17 2005 UTC (14 years, 6 months ago) by bates
Preparing for release 0.95-10

Revision 726 - Directory Listing
Modified Thu May 12 14:59:04 2005 UTC (14 years, 7 months ago) by bates
Release 0.95-9

Revision 725 - Directory Listing
Modified Tue May 10 14:50:39 2005 UTC (14 years, 7 months ago) by bates
Release 0.95-8 with bug fix for sparse symmetric solve

Revision 723 - Directory Listing
Modified Tue May 10 01:42:05 2005 UTC (14 years, 7 months ago) by bates
More logical sparse matrix methods

Revision 718 - Directory Listing
Modified Mon May 9 01:24:35 2005 UTC (14 years, 7 months ago) by bates
Getting ready for a release

Revision 714 - Directory Listing
Modified Fri May 6 23:52:34 2005 UTC (14 years, 7 months ago) by bates
Added colSums and friends for dgeMatrix class

Revision 711 - Directory Listing
Modified Thu May 5 04:12:44 2005 UTC (14 years, 7 months ago) by deepayan
Updates related to Laplace approximation

Revision 709 - Directory Listing
Modified Tue May 3 16:08:26 2005 UTC (14 years, 7 months ago) by deepayan
changes related to Laplace approximation, including new function to compute parts of the deviance in C code, which doesn't currently work

Revision 705 - Directory Listing
Modified Fri Apr 29 14:42:39 2005 UTC (14 years, 7 months ago) by deepayan
additions related to the Laplace approximation in glmm lmer models

Revision 700 - Directory Listing
Modified Mon Apr 18 20:21:04 2005 UTC (14 years, 7 months ago) by maechler
-Wall

Revision 694 - Directory Listing
Modified Mon Apr 18 17:11:32 2005 UTC (14 years, 7 months ago) by bates
Give a warning, not an error, for detection of exact singularity in the LU decomposition

Revision 692 - Directory Listing
Modified Mon Apr 18 14:34:33 2005 UTC (14 years, 7 months ago) by bates
Release 0.95-6

Revision 688 - Directory Listing
Modified Sat Apr 2 13:18:16 2005 UTC (14 years, 8 months ago) by maechler
no need for \ in %*% in error message

Revision 686 - Directory Listing
Modified Thu Mar 31 21:19:35 2005 UTC (14 years, 8 months ago) by bates
Create "fallback" methods for any kind of numeric, dense matrix

Revision 683 - Directory Listing
Modified Thu Mar 31 17:10:16 2005 UTC (14 years, 8 months ago) by bates
Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class

Revision 681 - Directory Listing
Modified Thu Mar 31 00:14:36 2005 UTC (14 years, 8 months ago) by bates
Repaired a thinko in the lmer_fitted function

Revision 679 - Directory Listing
Modified Wed Mar 30 14:42:36 2005 UTC (14 years, 8 months ago) by bates
Rename expand_column_pointers to expand_cmpPt (expand compressed pointers)

Revision 677 - Directory Listing
Modified Mon Mar 28 14:03:32 2005 UTC (14 years, 8 months ago) by bates
Added dgRMatrix methods and documentation

Revision 675 - Directory Listing
Modified Sat Mar 26 11:16:05 2005 UTC (14 years, 8 months ago) by maechler
export csc_tcrossprod - and add examples & test for tcrossprod()

Revision 655 - Directory Listing
Modified Wed Mar 16 16:37:05 2005 UTC (14 years, 8 months ago) by maechler
eliminate extraneous declaration for "-Wall"

Revision 654 - Directory Listing
Modified Wed Mar 16 16:18:33 2005 UTC (14 years, 8 months ago) by bates
Generalize matrix multiplication and solve methods

Revision 653 - Directory Listing
Modified Wed Mar 16 16:17:43 2005 UTC (14 years, 8 months ago) by bates
include permutation in expand method for LU

Revision 652 - Directory Listing
Modified Wed Mar 16 01:08:36 2005 UTC (14 years, 8 months ago) by bates
Updates to multiplication and other methods

Revision 649 - Directory Listing
Modified Tue Mar 15 00:59:38 2005 UTC (14 years, 8 months ago) by bates
Validate function stubs for pBunchKaufman and pCholesky classes

Revision 648 - Directory Listing
Modified Tue Mar 15 00:58:37 2005 UTC (14 years, 8 months ago) by bates
Zero the unused triangle in the Cholesky decomposition

Revision 643 - Directory Listing
Modified Tue Mar 15 00:50:48 2005 UTC (14 years, 8 months ago) by bates
Adding many methods for the dsyMatrix class

Revision 639 - Directory Listing
Modified Tue Mar 15 00:44:02 2005 UTC (14 years, 8 months ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 637 - Directory Listing
Modified Tue Mar 15 00:41:24 2005 UTC (14 years, 8 months ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 635 - Directory Listing
Modified Tue Mar 15 00:40:26 2005 UTC (14 years, 8 months ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 633 - Directory Listing
Modified Sun Mar 13 21:01:15 2005 UTC (14 years, 8 months ago) by maechler
comments

Revision 631 - Directory Listing
Modified Sun Mar 13 04:34:52 2005 UTC (14 years, 9 months ago) by bates
Add BunchKaufman factorization

Revision 629 - Directory Listing
Modified Thu Mar 10 19:00:57 2005 UTC (14 years, 9 months ago) by bates
Fix dgeMatrix_dtpMatrix_mm and add test

Revision 628 - Directory Listing
Modified Thu Mar 10 17:57:47 2005 UTC (14 years, 9 months ago) by maechler
more  %*% methods; some dimnames in C (untested); checks extended

Revision 622 - Directory Listing
Modified Mon Mar 7 12:45:59 2005 UTC (14 years, 9 months ago) by bates
Wrong number of args in lmer_update_mm

Revision 614 - Directory Listing
Modified Sat Mar 5 21:14:43 2005 UTC (14 years, 9 months ago) by maechler
L <-> U for transpose

Revision 613 - Directory Listing
Modified Sat Mar 5 21:13:40 2005 UTC (14 years, 9 months ago) by maechler
+ Matrix_DimnamesSym

Revision 605 - Directory Listing
Modified Fri Mar 4 17:29:02 2005 UTC (14 years, 9 months ago) by maechler
do not Calloc()/Free() in "good" case of check_scalar_string()

Revision 604 - Directory Listing
Modified Fri Mar 4 17:27:51 2005 UTC (14 years, 9 months ago) by maechler
check for integer 'x'

Revision 603 - Directory Listing
Modified Fri Mar 4 12:53:01 2005 UTC (14 years, 9 months ago) by bates
Define %*% method for dtpMatrix and matrix properly

Revision 599 - Directory Listing
Modified Fri Mar 4 03:49:53 2005 UTC (14 years, 9 months ago) by bates
Added C function lmer_fitted

Revision 597 - Directory Listing
Modified Thu Mar 3 19:58:59 2005 UTC (14 years, 9 months ago) by bates
Methods and coercions for the dtpMatrix class

Revision 592 - Directory Listing
Modified Thu Mar 3 05:16:50 2005 UTC (14 years, 9 months ago) by bates
Clean up *_validate functions

Revision 591 - Directory Listing
Modified Thu Mar 3 05:16:09 2005 UTC (14 years, 9 months ago) by bates
C functions for dtpMatrix class

Revision 589 - Directory Listing
Modified Wed Mar 2 19:53:53 2005 UTC (14 years, 9 months ago) by bates
more coercions

Revision 588 - Directory Listing
Modified Wed Mar 2 18:19:51 2005 UTC (14 years, 9 months ago) by bates
shorten csc_components_transpose to csc_compTr

Revision 587 - Directory Listing
Modified Wed Mar 2 18:19:15 2005 UTC (14 years, 9 months ago) by bates
dsTMatrix_as_dsCMatrix

Revision 586 - Directory Listing
Modified Tue Mar 1 14:55:03 2005 UTC (14 years, 9 months ago) by maechler
more "-Wall" dummy init.s

Revision 585 - Directory Listing
Modified Tue Mar 1 14:54:38 2005 UTC (14 years, 9 months ago) by maechler
typo in SelectQueue[o]neWay; comment

Revision 582 - Directory Listing
Modified Mon Feb 28 18:15:21 2005 UTC (14 years, 9 months ago) by bates
Internationalization and localization

Revision 576 - Directory Listing
Modified Sat Feb 26 18:18:30 2005 UTC (14 years, 9 months ago) by maechler
prevent segfault {but not "nicely"}

Revision 575 - Directory Listing
Modified Sat Feb 26 18:07:35 2005 UTC (14 years, 9 months ago) by maechler
use "(.)" against "-Wall" warning

Revision 572 - Directory Listing
Modified Fri Feb 25 14:11:54 2005 UTC (14 years, 9 months ago) by bates
Inlined function declarations moved within the conditional expression

Revision 565 - Directory Listing
Modified Tue Feb 22 01:15:45 2005 UTC (14 years, 9 months ago) by bates
Clean up documentation errors exposed by doxygen

Revision 564 - Directory Listing
Modified Sat Feb 19 03:25:17 2005 UTC (14 years, 9 months ago) by bates
Fix compiler warnings

Revision 563 - Directory Listing
Modified Sat Feb 19 02:08:36 2005 UTC (14 years, 9 months ago) by bates
Clean up warnings from compiler

Revision 560 - Directory Listing
Modified Fri Feb 18 14:29:53 2005 UTC (14 years, 9 months ago) by bates
Argument list for cscb_trsm

Revision 559 - Directory Listing
Modified Fri Feb 18 14:29:03 2005 UTC (14 years, 9 months ago) by bates
Changes for non-trivial cscb-trsm

Revision 557 - Directory Listing
Modified Thu Feb 17 01:18:02 2005 UTC (14 years, 9 months ago) by bates
Coercions and methods for the dsTMatrix class

Revision 556 - Directory Listing
Modified Wed Feb 16 20:49:44 2005 UTC (14 years, 9 months ago) by bates
Non-trivial cscb_ldl case

Revision 555 - Directory Listing
Modified Wed Feb 16 20:49:16 2005 UTC (14 years, 9 months ago) by bates
cosmetic changes - reformating

Revision 554 - Directory Listing
Modified Wed Feb 16 13:43:45 2005 UTC (14 years, 9 months ago) by bates
clean up logic

Revision 553 - Directory Listing
Modified Wed Feb 16 13:43:17 2005 UTC (14 years, 9 months ago) by bates
clean up long lines

Revision 551 - Directory Listing
Modified Tue Feb 15 22:28:03 2005 UTC (14 years, 9 months ago) by bates
triangular, triplet sparse matrices

Revision 546 - Directory Listing
Modified Tue Feb 15 22:09:12 2005 UTC (14 years, 9 months ago) by bates
Methods and coercions for the dtTMatrix class

Revision 543 - Directory Listing
Modified Sat Feb 12 13:37:46 2005 UTC (14 years, 9 months ago) by bates
Changes for non-nested vector-valued random effects

Revision 536 - Directory Listing
Modified Thu Feb 10 08:15:12 2005 UTC (14 years, 10 months ago) by bates
rearranging utility functions in the C code

Revision 534 - Directory Listing
Modified Tue Feb 8 08:59:31 2005 UTC (14 years, 10 months ago) by maechler
use mkString(); "uplo" and "diag" must be uppercase

Revision 531 - Directory Listing
Modified Mon Feb 7 11:04:53 2005 UTC (14 years, 10 months ago) by bates
Include the $(SUBSTAMP) target

Revision 526 - Directory Listing
Modified Mon Feb 7 10:50:20 2005 UTC (14 years, 10 months ago) by bates
Include a dependence of the LIB target on the OBJS

Revision 525 - Directory Listing
Modified Mon Feb 7 10:49:20 2005 UTC (14 years, 10 months ago) by bates
Force a call to Make lib in the subdirectories whenever the SHLIB
target is built.  Right now this isn't working properly.

Revision 496 - Directory Listing
Modified Fri Feb 4 18:14:08 2005 UTC (14 years, 10 months ago) by maechler
- get rid of two extraneous declarations
- use the SWAP(.) macro {as in other places}

Revision 495 - Directory Listing
Modified Thu Feb 3 18:48:31 2005 UTC (14 years, 10 months ago) by bates
Initial implementation of the Schur generic

Revision 493 - Directory Listing
Modified Thu Feb 3 18:47:20 2005 UTC (14 years, 10 months ago) by bates
Move the make_named function to Mutils as Matrix_make_named

Revision 492 - Directory Listing
Modified Thu Feb 3 14:24:03 2005 UTC (14 years, 10 months ago) by bates
Getting package to pass CMD check

Revision 491 - Directory Listing
Modified Wed Feb 2 19:40:26 2005 UTC (14 years, 10 months ago) by bates
renaming and rearranging classes

Revision 490 - Directory Listing
Modified Wed Feb 2 19:13:42 2005 UTC (14 years, 10 months ago) by bates
renaming and rearranging classes

Revision 488 - Directory Listing
Modified Wed Feb 2 19:11:51 2005 UTC (14 years, 10 months ago) by bates
renaming and rearranging classes

Revision 485 - Directory Listing
Modified Wed Feb 2 17:20:55 2005 UTC (14 years, 10 months ago) by bates
renaming and rearranging classes

Revision 482 - Directory Listing
Modified Wed Feb 2 15:37:31 2005 UTC (14 years, 10 months ago) by bates
renaming and rearranging classes

Revision 479 - Directory Listing
Modified Wed Feb 2 14:52:26 2005 UTC (14 years, 10 months ago) by bates
Renaming and reorganizing classes

Revision 478 - Directory Listing
Modified Wed Feb 2 14:33:51 2005 UTC (14 years, 10 months ago) by bates
Renaming and reorganizing classes

Revision 476 - Directory Listing
Modified Wed Feb 2 11:51:24 2005 UTC (14 years, 10 months ago) by bates
Change name of slot from factorization to factors

Revision 466 - Directory Listing
Modified Sat Jan 29 14:14:31 2005 UTC (14 years, 10 months ago) by bates
Add an externally accessible entry point to lmer_Crosstab

Revision 465 - Directory Listing
Modified Sat Jan 29 14:14:01 2005 UTC (14 years, 10 months ago) by bates
Add an externally accessible entry point to lmer_Crosstab

Revision 464 - Directory Listing
Modified Sat Jan 29 14:12:53 2005 UTC (14 years, 10 months ago) by bates
Clean up Lind calculation

Revision 463 - Directory Listing
Modified Sat Jan 29 14:11:34 2005 UTC (14 years, 10 months ago) by bates
Make make clean cleaner

Revision 461 - Directory Listing
Modified Sat Jan 29 14:09:38 2005 UTC (14 years, 10 months ago) by bates
Add expm function

Revision 451 - Directory Listing
Modified Sun Jan 23 10:05:53 2005 UTC (14 years, 10 months ago) by bates
New coercion method for cscBlocked objects

Revision 448 - Directory Listing
Modified Fri Jan 21 21:59:45 2005 UTC (14 years, 10 months ago) by bates
Release 0.8-23

Revision 447 - Directory Listing
Modified Fri Jan 21 12:17:56 2005 UTC (14 years, 10 months ago) by bates
Change char flags to cblas enum types

Revision 445 - Directory Listing
Modified Wed Jan 19 19:06:24 2005 UTC (14 years, 10 months ago) by bates
Off-diagonals from L, not ZZpO

Revision 444 - Directory Listing
Modified Wed Jan 19 19:05:15 2005 UTC (14 years, 10 months ago) by bates
Off-diagonals from L, not ZZpO

Revision 443 - Directory Listing
Modified Wed Jan 19 11:28:00 2005 UTC (14 years, 10 months ago) by bates
Remove references to the Linv slot.  Change to the extended parent
pairs.  Extensive changes in lmer_invert.  These still probably have
errors but this check in is to provide a checkpoint.

Revision 442 - Directory Listing
Modified Wed Jan 19 11:25:39 2005 UTC (14 years, 10 months ago) by bates
Remove any references to Linv.  Rewrite routines to use a solution
from L rather than multiplication by the inverse.  Change calling
sequences to use the Parent array.  Change the parent arrays to
extended parent pairs.

Revision 441 - Directory Listing
Modified Wed Jan 19 11:22:07 2005 UTC (14 years, 10 months ago) by bates
See if use of cblas would be a good idea

Revision 439 - Directory Listing
Modified Wed Jan 19 11:20:32 2005 UTC (14 years, 10 months ago) by bates
See if use of cblas would be a good idea

Revision 438 - Directory Listing
Modified Mon Jan 17 12:48:32 2005 UTC (14 years, 10 months ago) by bates
Remove mistaken transpose

Revision 437 - Directory Listing
Modified Mon Jan 17 12:47:29 2005 UTC (14 years, 10 months ago) by bates
Remove Linv references

Revision 434 - Directory Listing
Modified Thu Jan 13 19:36:12 2005 UTC (14 years, 10 months ago) by bates
Added and modified many functions to do solutions rather than inversions.

Revision 432 - Directory Listing
Modified Thu Jan 13 19:34:37 2005 UTC (14 years, 10 months ago) by bates
Define the AZERO macro

Revision 431 - Directory Listing
Modified Thu Jan 13 19:34:03 2005 UTC (14 years, 10 months ago) by bates
Use the AZERO macro

Revision 430 - Directory Listing
Modified Thu Jan 13 19:32:26 2005 UTC (14 years, 10 months ago) by bates
Add definitions of cscb_trsm and cscb_trcbsm

Revision 429 - Directory Listing
Modified Thu Jan 13 19:31:10 2005 UTC (14 years, 10 months ago) by bates
Many changes with respect to the representation and calculation steps.

Revision 425 - Directory Listing
Modified Wed Jan 5 15:26:34 2005 UTC (14 years, 11 months ago) by bates
decrement when counting down

Revision 424 - Directory Listing
Modified Wed Jan 5 13:50:30 2005 UTC (14 years, 11 months ago) by bates
Minor typos

Revision 422 - Directory Listing
Modified Tue Jan 4 23:45:15 2005 UTC (14 years, 11 months ago) by bates
Check in prior to leaving for Zuerich

Revision 417 - Directory Listing
Modified Mon Jan 3 19:14:22 2005 UTC (14 years, 11 months ago) by bates
Change to the lmer representation

Revision 415 - Directory Listing
Modified Mon Jan 3 19:05:11 2005 UTC (14 years, 11 months ago) by bates
Change to the lmer representation

Revision 412 - Directory Listing
Modified Tue Dec 28 15:06:55 2004 UTC (14 years, 11 months ago) by bates


Revision 410 - Directory Listing
Modified Tue Dec 28 14:51:42 2004 UTC (14 years, 11 months ago) by bates
Working on the lmer classes

Revision 397 - Directory Listing
Modified Thu Dec 16 19:15:32 2004 UTC (14 years, 11 months ago) by bates
Add arguments to ssclme_to_lme

Revision 390 - Directory Listing
Modified Tue Dec 14 19:58:55 2004 UTC (14 years, 11 months ago) by bates
Add a coercion for tripletMatrix to matrix

Revision 387 - Directory Listing
Modified Mon Dec 13 16:00:04 2004 UTC (14 years, 11 months ago) by bates
Keep -Wall happy

Revision 386 - Directory Listing
Modified Mon Dec 13 15:59:24 2004 UTC (14 years, 11 months ago) by bates
Fix bug in multivariate/multiple groups case

Revision 379 - Directory Listing
Modified Sat Dec 11 13:48:29 2004 UTC (15 years ago) by bates
make -Wall happy

Revision 378 - Directory Listing
Modified Sat Dec 11 13:47:45 2004 UTC (15 years ago) by bates
make -Wall happy

Revision 377 - Directory Listing
Modified Sat Dec 11 13:46:42 2004 UTC (15 years ago) by bates
make -Wall happy

Revision 376 - Directory Listing
Modified Sat Dec 11 13:44:01 2004 UTC (15 years ago) by bates
declaration of R_alloc

Revision 373 - Directory Listing
Modified Sun Dec 5 13:54:32 2004 UTC (15 years ago) by bates
Fixed nested scalar r.e., multivariate bug still outstanding

Revision 372 - Directory Listing
Modified Sun Dec 5 13:53:29 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 371 - Directory Listing
Modified Sun Dec 5 13:52:25 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 370 - Directory Listing
Modified Sun Dec 5 13:52:06 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 369 - Directory Listing
Modified Sun Dec 5 13:51:27 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 368 - Directory Listing
Modified Sun Dec 5 13:50:54 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 367 - Directory Listing
Modified Sun Dec 5 13:50:43 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 366 - Directory Listing
Modified Sun Dec 5 13:49:51 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 359 - Directory Listing
Modified Sat Nov 27 17:58:23 2004 UTC (15 years ago) by bates
Add a call to ldl_numeric to obtain row indices of diagonal blocks of L

Revision 358 - Directory Listing
Modified Sat Nov 27 17:57:19 2004 UTC (15 years ago) by bates
separate suboperations from Parent_inverse

Revision 357 - Directory Listing
Modified Sat Nov 27 17:56:13 2004 UTC (15 years ago) by bates
silly typo

Revision 356 - Directory Listing
Modified Sat Nov 27 01:45:39 2004 UTC (15 years ago) by bates
Add block updates in bCrosstab_convert

Revision 355 - Directory Listing
Modified Sat Nov 27 01:45:01 2004 UTC (15 years ago) by bates
Make Parent_inverse visible in include file

Revision 354 - Directory Listing
Modified Sat Nov 27 01:44:15 2004 UTC (15 years ago) by bates
Extract dependencies to an include file

Revision 351 - Directory Listing
Modified Tue Nov 23 15:40:28 2004 UTC (15 years ago) by bates
Move include file to C sources so the .h file can be included without pulling in a bunch of other stuff

Revision 347 - Directory Listing
Modified Tue Nov 23 15:37:58 2004 UTC (15 years ago) by bates
add blocked crosstabulations

Revision 345 - Directory Listing
Modified Tue Nov 23 15:35:55 2004 UTC (15 years ago) by bates
keep valgrind happy

Revision 343 - Directory Listing
Modified Mon Nov 15 23:29:28 2004 UTC (15 years ago) by bates
Fix on uninitialized value

Revision 342 - Directory Listing
Modified Mon Nov 15 13:55:52 2004 UTC (15 years ago) by bates
Updates for factorization name and default value

Revision 341 - Directory Listing
Modified Fri Nov 12 21:20:14 2004 UTC (15 years ago) by bates
Use Matrix_rcondSym

Revision 340 - Directory Listing
Modified Fri Nov 12 21:19:39 2004 UTC (15 years ago) by bates
Add syrk code

Revision 339 - Directory Listing
Modified Fri Nov 12 21:19:19 2004 UTC (15 years ago) by bates
Add syrk code

Revision 338 - Directory Listing
Modified Fri Nov 12 21:17:36 2004 UTC (15 years ago) by bates
Initialize all slots

Revision 332 - Directory Listing
Modified Fri Nov 12 21:04:36 2004 UTC (15 years ago) by bates
initialize all slots in a NEW_OBJECT

Revision 329 - Directory Listing
Modified Fri Nov 12 21:01:19 2004 UTC (15 years ago) by bates
Keep symbols and filenames consistent

Revision 328 - Directory Listing
Modified Sat Nov 6 18:05:00 2004 UTC (15 years, 1 month ago) by bates
Keep Makefile.win in sync with Makefile

Revision 311 - Directory Listing
Modified Wed Oct 27 21:41:02 2004 UTC (15 years, 1 month ago) by bates
Keep -Wall happy

Revision 310 - Directory Listing
Modified Wed Oct 27 21:40:08 2004 UTC (15 years, 1 month ago) by bates
add a blas-like routine

Revision 309 - Directory Listing
Modified Wed Oct 27 21:40:02 2004 UTC (15 years, 1 month ago) by bates
add a blas-like routine

Revision 308 - Directory Listing
Modified Wed Oct 27 21:39:44 2004 UTC (15 years, 1 month ago) by bates
cosmetic changes

Revision 307 - Directory Listing
Modified Wed Oct 27 21:38:58 2004 UTC (15 years, 1 month ago) by bates
Changes for check on Debian dgesdd

Revision 306 - Directory Listing
Modified Wed Oct 27 21:38:33 2004 UTC (15 years, 1 month ago) by bates
Changes for check on Debian dgesdd

Revision 305 - Directory Listing
Modified Wed Oct 27 21:36:19 2004 UTC (15 years, 1 month ago) by bates
updates and downdates

Revision 304 - Directory Listing
Modified Wed Oct 27 21:35:13 2004 UTC (15 years, 1 month ago) by bates
lmeRep_invert now applies to multiple, nested grouping factors

Revision 301 - Directory Listing
Modified Sun Oct 17 05:06:04 2004 UTC (15 years, 1 month ago) by bates
transfer to another computer

Revision 300 - Directory Listing
Modified Tue Oct 12 15:44:15 2004 UTC (15 years, 1 month ago) by bates
Adding lmeRep_L_sm and support routines

Revision 299 - Directory Listing
Modified Fri Oct 8 14:48:06 2004 UTC (15 years, 2 months ago) by bates
Only positions, not counts, from crossproduct

Revision 298 - Directory Listing
Modified Fri Oct 8 13:47:20 2004 UTC (15 years, 2 months ago) by bates
added validate functions

Revision 297 - Directory Listing
Modified Mon Oct 4 17:13:42 2004 UTC (15 years, 2 months ago) by bates
Add registration of .Call functions

Revision 296 - Directory Listing
Modified Mon Oct 4 17:13:29 2004 UTC (15 years, 2 months ago) by bates
Add registration of .Call functions

Revision 291 - Directory Listing
Modified Sun Oct 3 21:51:33 2004 UTC (15 years, 2 months ago) by bates
Release 0.8-15

Revision 282 - Directory Listing
Modified Sat Oct 2 15:03:47 2004 UTC (15 years, 2 months ago) by bates
Bug fixes in 0.8-14

Revision 280 - Directory Listing
Modified Mon Sep 13 12:32:23 2004 UTC (15 years, 2 months ago) by bates
minor format change

Revision 275 - Directory Listing
Modified Fri Sep 3 18:55:14 2004 UTC (15 years, 3 months ago) by bates
New storage format - currently works for single grouping factor

Revision 274 - Directory Listing
Modified Thu Sep 2 23:14:51 2004 UTC (15 years, 3 months ago) by bates
Interim version of lmeRep - not yet complete

Revision 272 - Directory Listing
Modified Thu Sep 2 23:14:00 2004 UTC (15 years, 3 months ago) by bates
Add cscBlocked, tweak lmeRep

Revision 268 - Directory Listing
Modified Tue Aug 31 19:13:33 2004 UTC (15 years, 3 months ago) by bates
New version

Revision 264 - Directory Listing
Modified Mon Aug 30 13:24:53 2004 UTC (15 years, 3 months ago) by bates
Initial lmeRep_update_mm modifications for multiple grouping factors

Revision 263 - Directory Listing
Modified Thu Aug 26 16:01:35 2004 UTC (15 years, 3 months ago) by bates
extending lmeRep to multiple nested grouping factors

Revision 257 - Directory Listing
Modified Tue Aug 24 02:08:08 2004 UTC (15 years, 3 months ago) by bates
Remove taucs, add lmeRep, new release

Revision 255 - Directory Listing
Modified Fri Aug 20 16:27:15 2004 UTC (15 years, 3 months ago) by bates
Add the lmeRep class

Revision 250 - Directory Listing
Modified Tue Aug 17 16:50:27 2004 UTC (15 years, 3 months ago) by bates
cleanup in EMsteps_verbose_print

Revision 247 - Directory Listing
Modified Mon Jul 12 17:41:57 2004 UTC (15 years, 5 months ago) by bates
Combine ssclme_coef and ssclme_coefUnc, ssclme_coefGets and ssclme_coefGetsUnc.  Reorganize gradient code in preparation for Hessian calculations.

Revision 245 - Directory Listing
Modified Mon Jul 12 12:46:54 2004 UTC (15 years, 5 months ago) by bates
Remove warnings, new release, change gradient calculation method

Revision 241 - Directory Listing
Modified Wed Jul 7 18:23:11 2004 UTC (15 years, 5 months ago) by bates
Remove pdMat classes

Revision 238 - Directory Listing
Modified Fri Jul 2 14:36:08 2004 UTC (15 years, 5 months ago) by bates
Updated Hessian method to symmetrize the result

Revision 237 - Directory Listing
Modified Thu Jul 1 03:20:33 2004 UTC (15 years, 5 months ago) by bates
Added stub of a Hessian generic and methods.

Revision 209 - Directory Listing
Modified Thu Jun 3 18:22:56 2004 UTC (15 years, 6 months ago) by bates
Combine the two ldl_symbolic routines

Revision 184 - Directory Listing
Modified Sun May 30 22:38:37 2004 UTC (15 years, 6 months ago) by bates
Experiments with projecting

Revision 176 - Directory Listing
Modified Fri May 28 13:23:44 2004 UTC (15 years, 6 months ago) by bates
Adding documentation - cleaning up code

Revision 174 - Directory Listing
Modified Wed May 19 16:45:00 2004 UTC (15 years, 6 months ago) by bates
remove unused variable

Revision 168 - Directory Listing
Modified Wed May 19 16:18:48 2004 UTC (15 years, 6 months ago) by bates
Multiple factors with some ni > 1

Revision 166 - Directory Listing
Modified Sat May 15 12:59:43 2004 UTC (15 years, 6 months ago) by bates
Accurate EM iteration count

Revision 164 - Directory Listing
Modified Fri May 14 21:00:04 2004 UTC (15 years, 6 months ago) by bates
Moving utilities to Matrix package

Revision 159 - Directory Listing
Modified Sun May 9 22:06:53 2004 UTC (15 years, 7 months ago) by bates
Remove storage of L-inverse

Revision 158 - Directory Listing
Modified Sun May 9 17:06:12 2004 UTC (15 years, 7 months ago) by bates
maxLI=0 option works

Revision 157 - Directory Listing
Modified Sun May 9 14:26:36 2004 UTC (15 years, 7 months ago) by bates
More attempts at the bVar calculation

Revision 153 - Directory Listing
Modified Fri May 7 19:35:35 2004 UTC (15 years, 7 months ago) by bates
Add routines to project and ldl_symbolic the ctab

Revision 150 - Directory Listing
Modified Tue May 4 22:52:19 2004 UTC (15 years, 7 months ago) by bates
Confused conflicts in checkins

Revision 149 - Directory Listing
Modified Tue May 4 22:30:39 2004 UTC (15 years, 7 months ago) by bates
Previous to changing permutation method

Revision 148 - Directory Listing
Modified Mon May 3 12:49:17 2004 UTC (15 years, 7 months ago) by bates
Rearranging code to isolate Metis includes

Revision 146 - Directory Listing
Modified Sat May 1 20:27:04 2004 UTC (15 years, 7 months ago) by bates
Yet another permutation calculation method

Revision 143 - Directory Listing
Modified Fri Apr 30 20:33:01 2004 UTC (15 years, 7 months ago) by bates
Permutations and update_mm

Revision 127 - Directory Listing
Modified Sun Apr 25 18:06:27 2004 UTC (15 years, 7 months ago) by bates
Remove useLast argument

Revision 125 - Directory Listing
Modified Sun Apr 25 11:59:37 2004 UTC (15 years, 7 months ago) by bates
gradients missing when deviance missing

Revision 122 - Directory Listing
Modified Fri Apr 23 22:06:08 2004 UTC (15 years, 7 months ago) by bates
Change ssclme_variances call

Revision 115 - Directory Listing
Modified Wed Apr 21 22:37:28 2004 UTC (15 years, 7 months ago) by bates
updated ssclme_collapse

Revision 114 - Directory Listing
Modified Wed Apr 21 20:45:22 2004 UTC (15 years, 7 months ago) by bates
Added ssclme_collapse

Revision 113 - Directory Listing
Modified Tue Apr 20 17:34:49 2004 UTC (15 years, 7 months ago) by bates
Correction for gradient and EMsteps

Revision 111 - Directory Listing
Modified Tue Apr 20 15:46:04 2004 UTC (15 years, 7 months ago) by bates
Release 0.8-5

Revision 108 - Directory Listing
Modified Mon Apr 19 17:44:22 2004 UTC (15 years, 7 months ago) by bates
Logic error in ssclme_update_mm

Revision 106 - Directory Listing
Modified Mon Apr 19 00:48:02 2004 UTC (15 years, 7 months ago) by bates
More work on gradient (still not correct)

Revision 105 - Directory Listing
Modified Sun Apr 18 22:12:10 2004 UTC (15 years, 7 months ago) by bates
Added gradient, consistent order of parameters

Revision 104 - Directory Listing
Modified Sun Apr 18 19:21:57 2004 UTC (15 years, 7 months ago) by bates
analytic gradient except for unconstrained, multidimensional case

Revision 101 - Directory Listing
Modified Sun Apr 18 14:59:53 2004 UTC (15 years, 7 months ago) by bates
Add gradient calculation

Revision 100 - Directory Listing
Modified Sat Apr 17 17:03:59 2004 UTC (15 years, 7 months ago) by bates
First cut at gradient

Revision 97 - Directory Listing
Modified Sat Apr 17 16:57:42 2004 UTC (15 years, 7 months ago) by bates
Cleanup of header file

Revision 93 - Directory Listing
Modified Fri Apr 16 21:19:40 2004 UTC (15 years, 7 months ago) by bates
New method of choosing between ties

Revision 86 - Directory Listing
Modified Thu Apr 15 21:40:17 2004 UTC (15 years, 7 months ago) by bates
Allow useLast option in sscCrosstab_groupedPerm

Revision 85 - Directory Listing
Modified Thu Apr 15 20:50:57 2004 UTC (15 years, 7 months ago) by bates
Working version of sscCrosstab_groupedPerm but about to do surgery on it

Revision 83 - Directory Listing
Modified Thu Apr 15 02:51:07 2004 UTC (15 years, 7 months ago) by bates
Working version of sscCrosstab_groupedPerm - still needs work

Revision 82 - Directory Listing
Modified Wed Apr 14 23:20:06 2004 UTC (15 years, 7 months ago) by bates
Updates to sscCrosstab_groupedPerm

Revision 77 - Directory Listing
Modified Wed Apr 14 20:44:19 2004 UTC (15 years, 7 months ago) by bates
New (experimental) groupedPerm

Revision 76 - Directory Listing
Modified Wed Apr 14 20:43:40 2004 UTC (15 years, 7 months ago) by bates
ssclme_EMsteps miscalculation

Revision 75 - Directory Listing
Modified Wed Apr 14 20:43:06 2004 UTC (15 years, 7 months ago) by bates
Fix Makefile.win

Revision 74 - Directory Listing
Modified Wed Apr 14 16:37:24 2004 UTC (15 years, 7 months ago) by bates
Original version of sscCrosstab_groupedPerm is about to be dismembered

Revision 73 - Directory Listing
Modified Tue Apr 13 15:53:38 2004 UTC (15 years, 7 months ago) by bates
R version of fill-reducing permutation

Revision 71 - Directory Listing
Modified Mon Apr 12 22:08:52 2004 UTC (15 years, 7 months ago) by bates
Release 0.8-3 to fix Makefile.win

Revision 70 - Directory Listing
Modified Mon Apr 12 12:10:01 2004 UTC (15 years, 8 months ago) by bates
Adding coercions - fixing bugs

Revision 57 - Directory Listing
Modified Tue Apr 6 22:09:52 2004 UTC (15 years, 8 months ago) by bates
Minor change for VarCorr

Revision 52 - Directory Listing
Modified Tue Apr 6 02:54:14 2004 UTC (15 years, 8 months ago) by bates
Lack of inclusion picked up by -Wall

Revision 50 - Directory Listing
Modified Tue Apr 6 02:27:37 2004 UTC (15 years, 8 months ago) by bates
Removing explicit umfpack code

Revision 47 - Directory Listing
Modified Tue Apr 6 02:25:00 2004 UTC (15 years, 8 months ago) by bates
Move triplet_to_col from umfpack

Revision 45 - Directory Listing
Modified Mon Apr 5 01:06:55 2004 UTC (15 years, 8 months ago) by bates
Added ssclme_variances

Revision 43 - Directory Listing
Modified Tue Mar 30 23:26:33 2004 UTC (15 years, 8 months ago) by bates
remove unnecessarily complicated C code for coercion (better done in R code)

Revision 34 - Directory Listing
Modified Mon Mar 29 01:49:38 2004 UTC (15 years, 8 months ago) by bates
Correct column of b[[i]] in _fitted

Revision 28 - Directory Listing
Modified Sun Mar 28 17:06:05 2004 UTC (15 years, 8 months ago) by bates
Added ssclme_fitted function

Revision 22 - Directory Listing
Modified Sat Mar 27 18:17:00 2004 UTC (15 years, 8 months ago) by bates
Dimensions of b-related values, dimnames

Revision 21 - Directory Listing
Modified Sat Mar 27 00:06:02 2004 UTC (15 years, 8 months ago) by bates
Changing dimensions in bVar and returned value from _ranef

Revision 19 - Directory Listing
Modified Tue Mar 23 23:29:55 2004 UTC (15 years, 8 months ago) by bates
Allow unconstrained coefficients

Revision 11 - Directory Listing
Modified Tue Mar 23 13:15:04 2004 UTC (15 years, 8 months ago) by bates
Change name of C function ssclme_EMsteps

Revision 10 - Directory Listing
Added Mon Mar 22 20:20:05 2004 UTC (15 years, 8 months ago) by bates
Initial import

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