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Revision 438 - Directory Listing
Modified Mon Jan 17 12:48:32 2005 UTC (14 years, 10 months ago) by bates
Remove mistaken transpose

Revision 437 - Directory Listing
Modified Mon Jan 17 12:47:29 2005 UTC (14 years, 10 months ago) by bates
Remove Linv references

Revision 434 - Directory Listing
Modified Thu Jan 13 19:36:12 2005 UTC (14 years, 10 months ago) by bates
Added and modified many functions to do solutions rather than inversions.

Revision 432 - Directory Listing
Modified Thu Jan 13 19:34:37 2005 UTC (14 years, 10 months ago) by bates
Define the AZERO macro

Revision 431 - Directory Listing
Modified Thu Jan 13 19:34:03 2005 UTC (14 years, 10 months ago) by bates
Use the AZERO macro

Revision 430 - Directory Listing
Modified Thu Jan 13 19:32:26 2005 UTC (14 years, 10 months ago) by bates
Add definitions of cscb_trsm and cscb_trcbsm

Revision 429 - Directory Listing
Modified Thu Jan 13 19:31:10 2005 UTC (14 years, 10 months ago) by bates
Many changes with respect to the representation and calculation steps.

Revision 425 - Directory Listing
Modified Wed Jan 5 15:26:34 2005 UTC (14 years, 11 months ago) by bates
decrement when counting down

Revision 424 - Directory Listing
Modified Wed Jan 5 13:50:30 2005 UTC (14 years, 11 months ago) by bates
Minor typos

Revision 422 - Directory Listing
Modified Tue Jan 4 23:45:15 2005 UTC (14 years, 11 months ago) by bates
Check in prior to leaving for Zuerich

Revision 417 - Directory Listing
Modified Mon Jan 3 19:14:22 2005 UTC (14 years, 11 months ago) by bates
Change to the lmer representation

Revision 415 - Directory Listing
Modified Mon Jan 3 19:05:11 2005 UTC (14 years, 11 months ago) by bates
Change to the lmer representation

Revision 412 - Directory Listing
Modified Tue Dec 28 15:06:55 2004 UTC (14 years, 11 months ago) by bates


Revision 410 - Directory Listing
Modified Tue Dec 28 14:51:42 2004 UTC (14 years, 11 months ago) by bates
Working on the lmer classes

Revision 397 - Directory Listing
Modified Thu Dec 16 19:15:32 2004 UTC (14 years, 11 months ago) by bates
Add arguments to ssclme_to_lme

Revision 390 - Directory Listing
Modified Tue Dec 14 19:58:55 2004 UTC (14 years, 11 months ago) by bates
Add a coercion for tripletMatrix to matrix

Revision 387 - Directory Listing
Modified Mon Dec 13 16:00:04 2004 UTC (14 years, 11 months ago) by bates
Keep -Wall happy

Revision 386 - Directory Listing
Modified Mon Dec 13 15:59:24 2004 UTC (14 years, 11 months ago) by bates
Fix bug in multivariate/multiple groups case

Revision 379 - Directory Listing
Modified Sat Dec 11 13:48:29 2004 UTC (15 years ago) by bates
make -Wall happy

Revision 378 - Directory Listing
Modified Sat Dec 11 13:47:45 2004 UTC (15 years ago) by bates
make -Wall happy

Revision 377 - Directory Listing
Modified Sat Dec 11 13:46:42 2004 UTC (15 years ago) by bates
make -Wall happy

Revision 376 - Directory Listing
Modified Sat Dec 11 13:44:01 2004 UTC (15 years ago) by bates
declaration of R_alloc

Revision 373 - Directory Listing
Modified Sun Dec 5 13:54:32 2004 UTC (15 years ago) by bates
Fixed nested scalar r.e., multivariate bug still outstanding

Revision 372 - Directory Listing
Modified Sun Dec 5 13:53:29 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 371 - Directory Listing
Modified Sun Dec 5 13:52:25 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 370 - Directory Listing
Modified Sun Dec 5 13:52:06 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 369 - Directory Listing
Modified Sun Dec 5 13:51:27 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 368 - Directory Listing
Modified Sun Dec 5 13:50:54 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 367 - Directory Listing
Modified Sun Dec 5 13:50:43 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 366 - Directory Listing
Modified Sun Dec 5 13:49:51 2004 UTC (15 years ago) by bates
R-specific versions of ldl

Revision 359 - Directory Listing
Modified Sat Nov 27 17:58:23 2004 UTC (15 years ago) by bates
Add a call to ldl_numeric to obtain row indices of diagonal blocks of L

Revision 358 - Directory Listing
Modified Sat Nov 27 17:57:19 2004 UTC (15 years ago) by bates
separate suboperations from Parent_inverse

Revision 357 - Directory Listing
Modified Sat Nov 27 17:56:13 2004 UTC (15 years ago) by bates
silly typo

Revision 356 - Directory Listing
Modified Sat Nov 27 01:45:39 2004 UTC (15 years ago) by bates
Add block updates in bCrosstab_convert

Revision 355 - Directory Listing
Modified Sat Nov 27 01:45:01 2004 UTC (15 years ago) by bates
Make Parent_inverse visible in include file

Revision 354 - Directory Listing
Modified Sat Nov 27 01:44:15 2004 UTC (15 years ago) by bates
Extract dependencies to an include file

Revision 351 - Directory Listing
Modified Tue Nov 23 15:40:28 2004 UTC (15 years ago) by bates
Move include file to C sources so the .h file can be included without pulling in a bunch of other stuff

Revision 347 - Directory Listing
Modified Tue Nov 23 15:37:58 2004 UTC (15 years ago) by bates
add blocked crosstabulations

Revision 345 - Directory Listing
Modified Tue Nov 23 15:35:55 2004 UTC (15 years ago) by bates
keep valgrind happy

Revision 343 - Directory Listing
Modified Mon Nov 15 23:29:28 2004 UTC (15 years ago) by bates
Fix on uninitialized value

Revision 342 - Directory Listing
Modified Mon Nov 15 13:55:52 2004 UTC (15 years ago) by bates
Updates for factorization name and default value

Revision 341 - Directory Listing
Modified Fri Nov 12 21:20:14 2004 UTC (15 years ago) by bates
Use Matrix_rcondSym

Revision 340 - Directory Listing
Modified Fri Nov 12 21:19:39 2004 UTC (15 years ago) by bates
Add syrk code

Revision 339 - Directory Listing
Modified Fri Nov 12 21:19:19 2004 UTC (15 years ago) by bates
Add syrk code

Revision 338 - Directory Listing
Modified Fri Nov 12 21:17:36 2004 UTC (15 years ago) by bates
Initialize all slots

Revision 332 - Directory Listing
Modified Fri Nov 12 21:04:36 2004 UTC (15 years ago) by bates
initialize all slots in a NEW_OBJECT

Revision 329 - Directory Listing
Modified Fri Nov 12 21:01:19 2004 UTC (15 years ago) by bates
Keep symbols and filenames consistent

Revision 328 - Directory Listing
Modified Sat Nov 6 18:05:00 2004 UTC (15 years, 1 month ago) by bates
Keep Makefile.win in sync with Makefile

Revision 311 - Directory Listing
Modified Wed Oct 27 21:41:02 2004 UTC (15 years, 1 month ago) by bates
Keep -Wall happy

Revision 310 - Directory Listing
Modified Wed Oct 27 21:40:08 2004 UTC (15 years, 1 month ago) by bates
add a blas-like routine

Revision 309 - Directory Listing
Modified Wed Oct 27 21:40:02 2004 UTC (15 years, 1 month ago) by bates
add a blas-like routine

Revision 308 - Directory Listing
Modified Wed Oct 27 21:39:44 2004 UTC (15 years, 1 month ago) by bates
cosmetic changes

Revision 307 - Directory Listing
Modified Wed Oct 27 21:38:58 2004 UTC (15 years, 1 month ago) by bates
Changes for check on Debian dgesdd

Revision 306 - Directory Listing
Modified Wed Oct 27 21:38:33 2004 UTC (15 years, 1 month ago) by bates
Changes for check on Debian dgesdd

Revision 305 - Directory Listing
Modified Wed Oct 27 21:36:19 2004 UTC (15 years, 1 month ago) by bates
updates and downdates

Revision 304 - Directory Listing
Modified Wed Oct 27 21:35:13 2004 UTC (15 years, 1 month ago) by bates
lmeRep_invert now applies to multiple, nested grouping factors

Revision 301 - Directory Listing
Modified Sun Oct 17 05:06:04 2004 UTC (15 years, 1 month ago) by bates
transfer to another computer

Revision 300 - Directory Listing
Modified Tue Oct 12 15:44:15 2004 UTC (15 years, 2 months ago) by bates
Adding lmeRep_L_sm and support routines

Revision 299 - Directory Listing
Modified Fri Oct 8 14:48:06 2004 UTC (15 years, 2 months ago) by bates
Only positions, not counts, from crossproduct

Revision 298 - Directory Listing
Modified Fri Oct 8 13:47:20 2004 UTC (15 years, 2 months ago) by bates
added validate functions

Revision 297 - Directory Listing
Modified Mon Oct 4 17:13:42 2004 UTC (15 years, 2 months ago) by bates
Add registration of .Call functions

Revision 296 - Directory Listing
Modified Mon Oct 4 17:13:29 2004 UTC (15 years, 2 months ago) by bates
Add registration of .Call functions

Revision 291 - Directory Listing
Modified Sun Oct 3 21:51:33 2004 UTC (15 years, 2 months ago) by bates
Release 0.8-15

Revision 282 - Directory Listing
Modified Sat Oct 2 15:03:47 2004 UTC (15 years, 2 months ago) by bates
Bug fixes in 0.8-14

Revision 280 - Directory Listing
Modified Mon Sep 13 12:32:23 2004 UTC (15 years, 2 months ago) by bates
minor format change

Revision 275 - Directory Listing
Modified Fri Sep 3 18:55:14 2004 UTC (15 years, 3 months ago) by bates
New storage format - currently works for single grouping factor

Revision 274 - Directory Listing
Modified Thu Sep 2 23:14:51 2004 UTC (15 years, 3 months ago) by bates
Interim version of lmeRep - not yet complete

Revision 272 - Directory Listing
Modified Thu Sep 2 23:14:00 2004 UTC (15 years, 3 months ago) by bates
Add cscBlocked, tweak lmeRep

Revision 268 - Directory Listing
Modified Tue Aug 31 19:13:33 2004 UTC (15 years, 3 months ago) by bates
New version

Revision 264 - Directory Listing
Modified Mon Aug 30 13:24:53 2004 UTC (15 years, 3 months ago) by bates
Initial lmeRep_update_mm modifications for multiple grouping factors

Revision 263 - Directory Listing
Modified Thu Aug 26 16:01:35 2004 UTC (15 years, 3 months ago) by bates
extending lmeRep to multiple nested grouping factors

Revision 257 - Directory Listing
Modified Tue Aug 24 02:08:08 2004 UTC (15 years, 3 months ago) by bates
Remove taucs, add lmeRep, new release

Revision 255 - Directory Listing
Modified Fri Aug 20 16:27:15 2004 UTC (15 years, 3 months ago) by bates
Add the lmeRep class

Revision 250 - Directory Listing
Modified Tue Aug 17 16:50:27 2004 UTC (15 years, 3 months ago) by bates
cleanup in EMsteps_verbose_print

Revision 247 - Directory Listing
Modified Mon Jul 12 17:41:57 2004 UTC (15 years, 5 months ago) by bates
Combine ssclme_coef and ssclme_coefUnc, ssclme_coefGets and ssclme_coefGetsUnc.  Reorganize gradient code in preparation for Hessian calculations.

Revision 245 - Directory Listing
Modified Mon Jul 12 12:46:54 2004 UTC (15 years, 5 months ago) by bates
Remove warnings, new release, change gradient calculation method

Revision 241 - Directory Listing
Modified Wed Jul 7 18:23:11 2004 UTC (15 years, 5 months ago) by bates
Remove pdMat classes

Revision 238 - Directory Listing
Modified Fri Jul 2 14:36:08 2004 UTC (15 years, 5 months ago) by bates
Updated Hessian method to symmetrize the result

Revision 237 - Directory Listing
Modified Thu Jul 1 03:20:33 2004 UTC (15 years, 5 months ago) by bates
Added stub of a Hessian generic and methods.

Revision 209 - Directory Listing
Modified Thu Jun 3 18:22:56 2004 UTC (15 years, 6 months ago) by bates
Combine the two ldl_symbolic routines

Revision 184 - Directory Listing
Modified Sun May 30 22:38:37 2004 UTC (15 years, 6 months ago) by bates
Experiments with projecting

Revision 176 - Directory Listing
Modified Fri May 28 13:23:44 2004 UTC (15 years, 6 months ago) by bates
Adding documentation - cleaning up code

Revision 174 - Directory Listing
Modified Wed May 19 16:45:00 2004 UTC (15 years, 6 months ago) by bates
remove unused variable

Revision 168 - Directory Listing
Modified Wed May 19 16:18:48 2004 UTC (15 years, 6 months ago) by bates
Multiple factors with some ni > 1

Revision 166 - Directory Listing
Modified Sat May 15 12:59:43 2004 UTC (15 years, 6 months ago) by bates
Accurate EM iteration count

Revision 164 - Directory Listing
Modified Fri May 14 21:00:04 2004 UTC (15 years, 6 months ago) by bates
Moving utilities to Matrix package

Revision 159 - Directory Listing
Modified Sun May 9 22:06:53 2004 UTC (15 years, 7 months ago) by bates
Remove storage of L-inverse

Revision 158 - Directory Listing
Modified Sun May 9 17:06:12 2004 UTC (15 years, 7 months ago) by bates
maxLI=0 option works

Revision 157 - Directory Listing
Modified Sun May 9 14:26:36 2004 UTC (15 years, 7 months ago) by bates
More attempts at the bVar calculation

Revision 153 - Directory Listing
Modified Fri May 7 19:35:35 2004 UTC (15 years, 7 months ago) by bates
Add routines to project and ldl_symbolic the ctab

Revision 150 - Directory Listing
Modified Tue May 4 22:52:19 2004 UTC (15 years, 7 months ago) by bates
Confused conflicts in checkins

Revision 149 - Directory Listing
Modified Tue May 4 22:30:39 2004 UTC (15 years, 7 months ago) by bates
Previous to changing permutation method

Revision 148 - Directory Listing
Modified Mon May 3 12:49:17 2004 UTC (15 years, 7 months ago) by bates
Rearranging code to isolate Metis includes

Revision 146 - Directory Listing
Modified Sat May 1 20:27:04 2004 UTC (15 years, 7 months ago) by bates
Yet another permutation calculation method

Revision 143 - Directory Listing
Modified Fri Apr 30 20:33:01 2004 UTC (15 years, 7 months ago) by bates
Permutations and update_mm

Revision 127 - Directory Listing
Modified Sun Apr 25 18:06:27 2004 UTC (15 years, 7 months ago) by bates
Remove useLast argument

Revision 125 - Directory Listing
Modified Sun Apr 25 11:59:37 2004 UTC (15 years, 7 months ago) by bates
gradients missing when deviance missing

Revision 122 - Directory Listing
Modified Fri Apr 23 22:06:08 2004 UTC (15 years, 7 months ago) by bates
Change ssclme_variances call

Revision 115 - Directory Listing
Modified Wed Apr 21 22:37:28 2004 UTC (15 years, 7 months ago) by bates
updated ssclme_collapse

Revision 114 - Directory Listing
Modified Wed Apr 21 20:45:22 2004 UTC (15 years, 7 months ago) by bates
Added ssclme_collapse

Revision 113 - Directory Listing
Modified Tue Apr 20 17:34:49 2004 UTC (15 years, 7 months ago) by bates
Correction for gradient and EMsteps

Revision 111 - Directory Listing
Modified Tue Apr 20 15:46:04 2004 UTC (15 years, 7 months ago) by bates
Release 0.8-5

Revision 108 - Directory Listing
Modified Mon Apr 19 17:44:22 2004 UTC (15 years, 7 months ago) by bates
Logic error in ssclme_update_mm

Revision 106 - Directory Listing
Modified Mon Apr 19 00:48:02 2004 UTC (15 years, 7 months ago) by bates
More work on gradient (still not correct)

Revision 105 - Directory Listing
Modified Sun Apr 18 22:12:10 2004 UTC (15 years, 7 months ago) by bates
Added gradient, consistent order of parameters

Revision 104 - Directory Listing
Modified Sun Apr 18 19:21:57 2004 UTC (15 years, 7 months ago) by bates
analytic gradient except for unconstrained, multidimensional case

Revision 101 - Directory Listing
Modified Sun Apr 18 14:59:53 2004 UTC (15 years, 7 months ago) by bates
Add gradient calculation

Revision 100 - Directory Listing
Modified Sat Apr 17 17:03:59 2004 UTC (15 years, 7 months ago) by bates
First cut at gradient

Revision 97 - Directory Listing
Modified Sat Apr 17 16:57:42 2004 UTC (15 years, 7 months ago) by bates
Cleanup of header file

Revision 93 - Directory Listing
Modified Fri Apr 16 21:19:40 2004 UTC (15 years, 7 months ago) by bates
New method of choosing between ties

Revision 86 - Directory Listing
Modified Thu Apr 15 21:40:17 2004 UTC (15 years, 7 months ago) by bates
Allow useLast option in sscCrosstab_groupedPerm

Revision 85 - Directory Listing
Modified Thu Apr 15 20:50:57 2004 UTC (15 years, 7 months ago) by bates
Working version of sscCrosstab_groupedPerm but about to do surgery on it

Revision 83 - Directory Listing
Modified Thu Apr 15 02:51:07 2004 UTC (15 years, 7 months ago) by bates
Working version of sscCrosstab_groupedPerm - still needs work

Revision 82 - Directory Listing
Modified Wed Apr 14 23:20:06 2004 UTC (15 years, 7 months ago) by bates
Updates to sscCrosstab_groupedPerm

Revision 77 - Directory Listing
Modified Wed Apr 14 20:44:19 2004 UTC (15 years, 7 months ago) by bates
New (experimental) groupedPerm

Revision 76 - Directory Listing
Modified Wed Apr 14 20:43:40 2004 UTC (15 years, 7 months ago) by bates
ssclme_EMsteps miscalculation

Revision 75 - Directory Listing
Modified Wed Apr 14 20:43:06 2004 UTC (15 years, 7 months ago) by bates
Fix Makefile.win

Revision 74 - Directory Listing
Modified Wed Apr 14 16:37:24 2004 UTC (15 years, 7 months ago) by bates
Original version of sscCrosstab_groupedPerm is about to be dismembered

Revision 73 - Directory Listing
Modified Tue Apr 13 15:53:38 2004 UTC (15 years, 7 months ago) by bates
R version of fill-reducing permutation

Revision 71 - Directory Listing
Modified Mon Apr 12 22:08:52 2004 UTC (15 years, 8 months ago) by bates
Release 0.8-3 to fix Makefile.win

Revision 70 - Directory Listing
Modified Mon Apr 12 12:10:01 2004 UTC (15 years, 8 months ago) by bates
Adding coercions - fixing bugs

Revision 57 - Directory Listing
Modified Tue Apr 6 22:09:52 2004 UTC (15 years, 8 months ago) by bates
Minor change for VarCorr

Revision 52 - Directory Listing
Modified Tue Apr 6 02:54:14 2004 UTC (15 years, 8 months ago) by bates
Lack of inclusion picked up by -Wall

Revision 50 - Directory Listing
Modified Tue Apr 6 02:27:37 2004 UTC (15 years, 8 months ago) by bates
Removing explicit umfpack code

Revision 47 - Directory Listing
Modified Tue Apr 6 02:25:00 2004 UTC (15 years, 8 months ago) by bates
Move triplet_to_col from umfpack

Revision 45 - Directory Listing
Modified Mon Apr 5 01:06:55 2004 UTC (15 years, 8 months ago) by bates
Added ssclme_variances

Revision 43 - Directory Listing
Modified Tue Mar 30 23:26:33 2004 UTC (15 years, 8 months ago) by bates
remove unnecessarily complicated C code for coercion (better done in R code)

Revision 34 - Directory Listing
Modified Mon Mar 29 01:49:38 2004 UTC (15 years, 8 months ago) by bates
Correct column of b[[i]] in _fitted

Revision 28 - Directory Listing
Modified Sun Mar 28 17:06:05 2004 UTC (15 years, 8 months ago) by bates
Added ssclme_fitted function

Revision 22 - Directory Listing
Modified Sat Mar 27 18:17:00 2004 UTC (15 years, 8 months ago) by bates
Dimensions of b-related values, dimnames

Revision 21 - Directory Listing
Modified Sat Mar 27 00:06:02 2004 UTC (15 years, 8 months ago) by bates
Changing dimensions in bVar and returned value from _ranef

Revision 19 - Directory Listing
Modified Tue Mar 23 23:29:55 2004 UTC (15 years, 8 months ago) by bates
Allow unconstrained coefficients

Revision 11 - Directory Listing
Modified Tue Mar 23 13:15:04 2004 UTC (15 years, 8 months ago) by bates
Change name of C function ssclme_EMsteps

Revision 10 - Directory Listing
Added Mon Mar 22 20:20:05 2004 UTC (15 years, 8 months ago) by bates
Initial import

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