SCM

SCM Repository

[matrix] Diff of /pkg/src/Mutils.h
ViewVC logotype

Diff of /pkg/src/Mutils.h

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 1507, Mon Sep 4 18:41:34 2006 UTC revision 2392, Fri Jun 5 10:34:37 2009 UTC
# Line 1  Line 1 
1  #ifndef MATRIX_MUTILS_H  #ifndef MATRIX_MUTILS_H
2  #define MATRIX_MUTILS_H  #define MATRIX_MUTILS_H
3    
4    #define Matrix_with_SPQR
5    
6  #ifdef __cplusplus  #ifdef __cplusplus
7  extern "C" {  extern "C" {
8  #endif  #endif
9    
10  #include <Rdefines.h> /* Rinternals.h + GET_SLOT etc */  #include <ctype.h>
11  #include <R.h>  /* includes Rconfig.h */  #include <R.h>  /* includes Rconfig.h */
12    #include <Rversion.h>
13    #include <Rdefines.h> /* Rinternals.h + GET_SLOT etc */
14    
15  #ifdef ENABLE_NLS  #ifdef ENABLE_NLS
16  #include <libintl.h>  #include <libintl.h>
17  #define _(String) dgettext ("Matrix", String)  #define _(String) dgettext ("Matrix", String)
18  #else  #else
19  #define _(String) (String)  #define _(String) (String)
20    /* Note that this is not yet supported (for Windows, e.g.) in R 2.9.0 : */
21    #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String)
22    #endif
23    
24    #ifdef __GNUC__
25    # undef alloca
26    # define alloca(x) __builtin_alloca((x))
27    #elif defined(__sun) || defined(_AIX)
28    /* this is necessary (and sufficient) for Solaris 10 and AIX 6: */
29    # include <alloca.h>
30  #endif  #endif
31    
32    #define Alloca(n, t)   (t *) alloca( (size_t) ( (n) * sizeof(t) ) )
33    
34  SEXP triangularMatrix_validate(SEXP obj);  SEXP triangularMatrix_validate(SEXP obj);
35  SEXP symmetricMatrix_validate(SEXP obj);  SEXP symmetricMatrix_validate(SEXP obj);
36  SEXP dense_nonpacked_validate(SEXP obj);  SEXP dense_nonpacked_validate(SEXP obj);
# Line 37  Line 53 
53  #define LFT CblasLeft  #define LFT CblasLeft
54  #define RGT CblasRight  #define RGT CblasRight
55    
56  char norm_type(char *typstr);  #if !defined(R_VERSION) || R_VERSION < R_Version(2, 7, 0)
57  char rcond_type(char *typstr);  char La_norm_type(const char *typstr);
58    char La_rcond_type(const char *typstr);
59    #endif
60    
61  double get_double_by_name(SEXP obj, char *nm);  double get_double_by_name(SEXP obj, char *nm);
62  SEXP set_double_by_name(SEXP obj, double val, char *nm);  SEXP set_double_by_name(SEXP obj, double val, char *nm);
63  SEXP as_det_obj(double val, int log, int sign);  SEXP as_det_obj(double val, int log, int sign);
64  SEXP get_factors(SEXP obj, char *nm);  SEXP get_factors(SEXP obj, char *nm);
65  SEXP set_factors(SEXP obj, SEXP val, char *nm);  SEXP set_factors(SEXP obj, SEXP val, char *nm);
66    
67    #if 0
68  SEXP dgCMatrix_set_Dim(SEXP x, int nrow);  SEXP dgCMatrix_set_Dim(SEXP x, int nrow);
69  char uplo_value(SEXP x);  #endif  /* unused */
 char diag_value(SEXP x);  
70    
71  int csc_unsorted_columns(int ncol, const int p[], const int i[]);  /* int csc_unsorted_columns(int ncol, const int p[], const int i[]); */
72  void csc_sort_columns(int ncol, const int p[], int i[], double x[]);  /* void csc_sort_columns(int ncol, const int p[], int i[], double x[]); */
73  SEXP csc_check_column_sorting(SEXP A);  /* SEXP csc_check_column_sorting(SEXP A); */
74  SEXP Matrix_make_named(int TYP, char **names);  SEXP Matrix_make_named(int TYP, const char **names);
75  SEXP check_scalar_string(SEXP sP, char *vals, char *nm);  SEXP check_scalar_string(SEXP sP, char *vals, char *nm);
76  double *packed_getDiag(double *dest, SEXP x);  Rboolean equal_string_vectors(SEXP s1, SEXP s2);
77    
78    void d_packed_getDiag(double *dest, SEXP x, int n);
79    void l_packed_getDiag(   int *dest, SEXP x, int n);
80    void tr_d_packed_getDiag(double *dest, SEXP x);
81    void tr_l_packed_getDiag(   int *dest, SEXP x);
82    
83  SEXP Matrix_getElement(SEXP list, char *nm);  SEXP Matrix_getElement(SEXP list, char *nm);
84    
85  #define PACKED_TO_FULL(TYPE)                                            \  #define PACKED_TO_FULL(TYPE)                                            \
# Line 81  Line 107 
107  #define PACKED_LENGTH(n)   ((n) * ((n) + 1))/2  #define PACKED_LENGTH(n)   ((n) * ((n) + 1))/2
108    
109  /* duplicate the slot with name given by sym from src to dest */  /* duplicate the slot with name given by sym from src to dest */
110    
111  #define slot_dup(dest, src, sym)  SET_SLOT(dest, sym, duplicate(GET_SLOT(src, sym)))  #define slot_dup(dest, src, sym)  SET_SLOT(dest, sym, duplicate(GET_SLOT(src, sym)))
112    
113    /* is not yet used: */
114    #define slot_nonNull_dup(dest, src, sym)                        \
115        if(GET_SLOT(src, sym) != R_NilValue)                        \
116            SET_SLOT(dest, sym, duplicate(GET_SLOT(src, sym)))
117    
118    /* TODO: Make this faster for the case where dimnames = list(NULL,NULL)
119     *       and hence don't have to be set ! */
120    #define SET_DimNames(dest, src) slot_dup(dest, src, Matrix_DimNamesSym)
121    
122    
123  #define uplo_P(_x_) CHAR(STRING_ELT(GET_SLOT(_x_, Matrix_uploSym), 0))  #define uplo_P(_x_) CHAR(STRING_ELT(GET_SLOT(_x_, Matrix_uploSym), 0))
124  #define diag_P(_x_) CHAR(STRING_ELT(GET_SLOT(_x_, Matrix_diagSym), 0))  #define diag_P(_x_) CHAR(STRING_ELT(GET_SLOT(_x_, Matrix_diagSym), 0))
125  #define class_P(_x_) CHAR(asChar(getAttrib(_x_, R_ClassSymbol)))  #define class_P(_x_) CHAR(asChar(getAttrib(_x_, R_ClassSymbol)))
126    
127    /* should also work for "matrix" matrices: */
128    #define Real_KIND(_x_)  (IS_S4_OBJECT(_x_) ? Real_kind(_x_) : \
129                             (isReal(_x_) ? 0 : (isLogical(_x_) ? 1 : -1)))
130    /* This one gives '0' also for integer "matrix" :*/
131    #define Real_KIND2(_x_) (IS_S4_OBJECT(_x_) ? Real_kind(_x_) : \
132                             (isLogical(_x_) ? 1 : 0))
133    
134    /* requires 'x' slot: */
135    #define Real_kind(_x_)  (isReal(GET_SLOT(_x_, Matrix_xSym)) ? 0 :       \
136                             (isLogical(GET_SLOT(_x_, Matrix_xSym)) ? 1 : -1))
137    
138    #define DECLARE_AND_GET_X_SLOT(__C_TYPE, __SEXP)        \
139        __C_TYPE *xx = __SEXP(GET_SLOT(x, Matrix_xSym))
140    
141    
142  /**  /**
143   * Check for valid length of a packed triangular array and return the   * Check for valid length of a packed triangular array and return the
144   * corresponding number of columns   * corresponding number of columns
# Line 113  Line 165 
165   * this behavior changes then ALLOC_SLOT must use SET_SLOT followed by   * this behavior changes then ALLOC_SLOT must use SET_SLOT followed by
166   * GET_SLOT to ensure that the value returned is indeed the SEXP in   * GET_SLOT to ensure that the value returned is indeed the SEXP in
167   * the slot.   * the slot.
168     * NOTE:  GET_SLOT(x, what)        :== R_do_slot       (x, what)
169     * ----   SET_SLOT(x, what, value) :== R_do_slot_assign(x, what, value)
170     * and the R_do_slot* are in src/main/attrib.c
171   *   *
172   * @param obj object in which to assign the slot   * @param obj object in which to assign the slot
173   * @param nm name of the slot, as an R name object   * @param nm name of the slot, as an R name object
# Line 151  Line 206 
206      return mj;      return mj;
207  }  }
208    
   
209  /**  /**
210   * Return the linear index of the (row, col) entry in a csc structure.   * Check if slot(obj, "x") contains any NA (or NaN).
  * If the entry is not found and missing is 0 an error is signaled;  
  * otherwise the missing value is returned.  
211   *   *
212   * @param p vector of column pointers   * @param obj   a 'Matrix' object with an 'x' slot.
  * @param i vector of row indices  
  * @param row row index  
  * @param col column index  
  * @param missing the value to return is the row, col entry does not  
  * exist.  If this is zero and the row, col entry does not exist an  
  * error is signaled.  
213   *   *
214   * @return index of element at (row, col) if it exists, otherwise missing   * @return Rboolean :== any(is.na(slot(obj, "x") )
  */  
 static R_INLINE int  
 check_csc_index(const int p[], const int i[], int row, int col, int missing)  
 {  
     int k, k2 = p[col + 1];  
                                 /* linear search - perhaps replace by bsearch */  
     for (k = p[col]; k < k2; k++) if (i[k] == row) return k;  
     if (!missing)  
         error("row %d and column %d not defined in rowind and colptr",  
               row, col);  
     return missing;  
 }  
   
 /**  
  * Calculate the zero-based index in a row-wise packed lower triangular matrix.  
  * This is used for the arrays of blocked sparse matrices.  
  *  
  * @param i column number (zero-based)  
  * @param k row number (zero-based)  
  *  
  * @return The index of the (k,i) element of a packed lower triangular matrix  
215   */   */
216  static R_INLINE  static R_INLINE
217  int Lind(int k, int i)  Rboolean any_NA(SEXP obj)
 {  
     if (k < i) error("Lind(k = %d, i = %d) must have k >= i", k, i);  
     return (k * (k + 1))/2 + i;  
 }  
   
 double *expand_csc_column(double *dest, int m, int j,  
                           const int Ap[], const int Ai[], const double Ax[]);  
   
 /**  
  * Apply a permutation to an integer vector  
  *  
  * @param i vector of 0-based indices  
  * @param n length of vector i  
  * @param perm 0-based permutation vector of length max(i) + 1  
  */  
 static R_INLINE void  
 int_permute(int i[], int n, const int perm[])  
218  {  {
219      int j;      double *x = REAL(GET_SLOT(obj, Matrix_xSym));
220      for (j = 0; j < n; j++) i[j] = perm[i[j]];      int i, n = LENGTH(GET_SLOT(obj, Matrix_xSym));
221        for(i=0; i < n; i++)
222            if(ISNAN(x[i])) return TRUE;
223        /* else */
224        return FALSE;
225  }  }
226    
 /**  
  * Force index pairs to be in the upper triangle of a matrix  
  *  
  * @param i vector of 0-based row indices  
  * @param j vector of 0-based column indices  
  * @param nnz length of index vectors  
  */  
 static R_INLINE void  
 make_upper_triangular(int i[], int j[], int nnz)  
 {  
     int k;  
     for (k = 0; k < nnz; k++) {  
         if (i[k] > j[k]) {  
             int tmp = i[k];  
             i[k] = j[k];  
             j[k] = tmp;  
         }  
     }  
 }  
227    
228  void make_d_matrix_triangular(double *x, SEXP from);  void make_d_matrix_triangular(double *x, SEXP from);
229  void make_i_matrix_triangular(   int *x, SEXP from);  void make_i_matrix_triangular(   int *x, SEXP from);
# Line 240  Line 233 
233    
234  SEXP Matrix_expand_pointers(SEXP pP);  SEXP Matrix_expand_pointers(SEXP pP);
235    
236    SEXP dup_mMatrix_as_dgeMatrix(SEXP A);
237    SEXP dup_mMatrix_as_geMatrix (SEXP A);
238    
239  /**  SEXP new_dgeMatrix(int nrow, int ncol);
240   * Elementwise increment dest by src  SEXP m_encodeInd (SEXP ij, SEXP di);
241   *  SEXP m_encodeInd2(SEXP i, SEXP j, SEXP di);
  * @param dest vector to be incremented  
  * @param src vector to be added to dest  
  * @param n length of vectors  
  *  
  * @return dest  
  */  
 static R_INLINE double*  
 vecIncrement(double dest[], const double src[], int n) {  
     int i;  
     for (i = 0; i < n; i++) dest[i] += src[i];  
     return dest;  
 }  
   
 /**  
  * Elementwise sum of src1 and src2 into dest  
  *  
  * @param dest vector to be incremented  
  * @param src1 vector to be added  
  * @param src1 second vector to be added  
  * @param n length of vectors  
  *  
  * @return dest  
  */  
 static R_INLINE double*  
 vecSum(double dest[], const double src1[], const double src2[],  
        int n) {  
     int i;  
     for (i = 0; i < n; i++) dest[i] = src1[i] + src2[i];  
     return dest;  
 }  
   
 SEXP alloc_dgeMatrix(int m, int n, SEXP rownms, SEXP colnms);  
 SEXP alloc_dpoMatrix(int n, char *uplo, SEXP rownms, SEXP colnms);  
 SEXP alloc_dtrMatrix(int n, char *uplo, char *diag, SEXP rownms, SEXP colnms);  
 SEXP alloc_dsCMatrix(int n, int nz, char *uplo, SEXP rownms, SEXP colnms);  
242    
 SEXP dup_mMatrix_as_dgeMatrix(SEXP A);  
243    
244  static R_INLINE SEXP  static R_INLINE SEXP
245  mMatrix_as_dgeMatrix(SEXP A)  mMatrix_as_dgeMatrix(SEXP A)
# Line 288  Line 247 
247      return strcmp(class_P(A), "dgeMatrix") ? dup_mMatrix_as_dgeMatrix(A) : A;      return strcmp(class_P(A), "dgeMatrix") ? dup_mMatrix_as_dgeMatrix(A) : A;
248  }  }
249    
250    static R_INLINE SEXP
251    mMatrix_as_geMatrix(SEXP A)
252    {
253        return strcmp(class_P(A) + 1, "geMatrix") ? dup_mMatrix_as_geMatrix(A) : A;
254    }
255    
256  /**  /**
257   * Return the 0-based index of a string match in a vector of strings   * Return the 0-based index of a string match in a vector of strings
258   * terminated by an empty string.  Returns -1 for no match.   * terminated by an empty string.  Returns -1 for no match.
259   *   *
260   * @param dest class string to match   * @param class string to match
261   * @param valid vector of possible matches terminated by an empty string   * @param valid vector of possible matches terminated by an empty string
262   *   *
263   * @return index of match or -1 for no match   * @return index of match or -1 for no match
264   */   */
265  static R_INLINE int  static R_INLINE int
266  Matrix_check_class(char *class, char **valid)  Matrix_check_class(const char *class, char **valid)
267  {  {
268      int ans;      int ans;
269      for (ans = 0; ; ans++) {      for (ans = 0; ; ans++) {
# Line 307  Line 272 
272      }      }
273  }  }
274    
275    int Matrix_check_class_etc(SEXP x, char **valid);
276    int Matrix_check_class_and_super(SEXP x, char **valid, SEXP rho);
277    
278  #ifdef __cplusplus  #ifdef __cplusplus
279  }  }
280  #endif  #endif

Legend:
Removed from v.1507  
changed lines
  Added in v.2392

root@r-forge.r-project.org
ViewVC Help
Powered by ViewVC 1.0.0  
Thanks to:
Vienna University of Economics and Business Powered By FusionForge