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Sticky Revision:

Revision 2064 - Directory Listing
Modified Mon Jul 17 10:08:40 2017 UTC (21 months ago) by jeanlobry
removing unused variables

Revision 2060 - Directory Listing
Modified Sun Jul 16 15:38:36 2017 UTC (21 months, 1 week ago) by jeanlobry
fixing accurary bug repported by SCH

Revision 2045 - Directory Listing
Modified Mon Jul 3 17:35:32 2017 UTC (21 months, 2 weeks ago) by jeanlobry
adding the new argument rmgap to kaks

Revision 2044 - Directory Listing
Modified Mon Jul 3 17:35:05 2017 UTC (21 months, 2 weeks ago) by jeanlobry
adding the new argument rmgap to kaks

Revision 2040 - Directory Listing
Modified Mon Jul 3 12:58:52 2017 UTC (21 months, 2 weeks ago) by jeanlobry
adding the isfinite condition so that non-finite values should no more be returned

Revision 2037 - Directory Listing
Modified Wed Jun 28 09:20:41 2017 UTC (21 months, 3 weeks ago) by jeanlobry
UTF8

Revision 2035 - Directory Listing
Modified Fri Apr 14 12:15:20 2017 UTC (2 years ago) by simonpenel
Modification of kaks according to Tomas Kalibera bug-finding tool suggestion

Revision 2027 - Directory Listing
Modified Mon Apr 3 07:40:18 2017 UTC (2 years ago) by simonpenel
Addition of packagename_init.c and modifications for registered routines

Revision 1990 - Directory Listing
Modified Thu Sep 1 13:02:24 2016 UTC (2 years, 7 months ago) by simonpenel
improved read.alignment function thanks  to Matthew Krause

Revision 1988 - Directory Listing
Modified Thu Jul 21 15:50:52 2016 UTC (2 years, 9 months ago) by simonpenel
Testing zlib sockets

Revision 1831 - Directory Listing
Modified Tue Dec 2 16:34:12 2014 UTC (4 years, 4 months ago) by simonpenel
Removal of zlib code and headers  with help from Prof. Ripley

Revision 1830 - Directory Listing
Modified Tue Dec 2 16:31:43 2014 UTC (4 years, 4 months ago) by simonpenel


Revision 1778 - Directory Listing
Modified Wed May 21 15:38:04 2014 UTC (4 years, 11 months ago) by simonpenel
Now the mase format is checked, thanks to Jan-Hendrik Troesemeier

Revision 1777 - Directory Listing
Modified Thu Jan 30 14:39:20 2014 UTC (5 years, 2 months ago) by simonpenel
In function dist.alignment with nucleotides sequences, if gap option is set to 1, gaps will be counted in the identity measure (thanks to Peter Hraber)

Revision 1774 - Directory Listing
Modified Wed May 29 15:27:16 2013 UTC (5 years, 10 months ago) by simonpenel
Modification of C source : sequence name with space are correctly treated in fasta format

Revision 1769 - Directory Listing
Modified Wed Feb 22 10:15:53 2012 UTC (7 years, 2 months ago) by simonpenel
Small modifications :  supression of stderr C stuff, and partial match problems

Revision 1768 - Directory Listing
Modified Mon Feb 20 12:00:59 2012 UTC (7 years, 2 months ago) by simonpenel
Changing date and release number

Revision 1767 - Directory Listing
Modified Fri Feb 17 14:29:26 2012 UTC (7 years, 2 months ago) by simonpenel
Modification of kaks: option verbose display  values of L0,L2,L4,A0,A2,A4,B0,B2,B4 

Revision 1727 - Directory Listing
Modified Sat Mar 6 09:53:57 2010 UTC (9 years, 1 month ago) by lobry
memory leak problem fix in read_fasta_align

Revision 1726 - Directory Listing
Modified Sat Mar 6 09:52:44 2010 UTC (9 years, 1 month ago) by lobry
memory leak problem fix in read_fasta_align

Revision 1649 - Directory Listing
Modified Tue Sep 22 13:10:04 2009 UTC (9 years, 7 months ago) by lobry
 

Revision 1603 - Directory Listing
Modified Sun Apr 26 11:49:05 2009 UTC (9 years, 11 months ago) by lobry
now any non ACGT base in a codon force it to a gap codon ---

Revision 1593 - Directory Listing
Modified Thu Apr 23 16:45:50 2009 UTC (10 years ago) by lobry
more explicit error message and REprintf instead of error

Revision 1447 - Directory Listing
Modified Fri Aug 1 08:38:07 2008 UTC (10 years, 8 months ago) by simonpenel


Revision 1444 - Directory Listing
Modified Tue Jul 29 15:56:28 2008 UTC (10 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/pkg/src
renome seqinr en pkg

Revision 1330 - Directory Listing
Modified Mon Dec 3 09:04:43 2007 UTC (11 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 1248 - Directory Listing
Modified Tue Oct 30 13:59:46 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
printf -> Rprintf

Revision 1095 - Directory Listing
Modified Mon Sep 24 11:38:17 2007 UTC (11 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
explicit cast (char *) added

Revision 996 - Directory Listing
Modified Tue May 22 09:20:14 2007 UTC (11 years, 11 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Suppression de la derniere modif sur l'entier associe au soacket

Revision 995 - Directory Listing
Modified Tue May 22 09:13:14 2007 UTC (11 years, 11 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Modif de l'entier associe au numero de socket pour que ca tourne sur l'OS unix
de pbil

Revision 988 - Directory Listing
Modified Thu Apr 19 12:23:37 2007 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 987 - Directory Listing
Modified Thu Apr 19 09:42:31 2007 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 986 - Directory Listing
Modified Thu Apr 19 09:40:19 2007 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Ajout des fichiers .c et .h de zlib

Revision 952 - Directory Listing
Modified Thu Apr 12 21:11:11 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
I have removed the non standard -ansi C flag for compilation

Revision 947 - Directory Listing
Modified Wed Apr 11 12:46:50 2007 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 946 - Directory Listing
Modified Wed Apr 11 12:46:27 2007 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Modifs pour pour pas executer les sockets sur Windaube:w

Revision 945 - Directory Listing
Modified Tue Apr 10 13:54:57 2007 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Je supprime l'utilisation de getConnection

Revision 931 - Directory Listing
Modified Tue Mar 27 13:58:46 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
<zlib.h>

Revision 898 - Directory Listing
Modified Fri Mar 9 13:26:40 2007 UTC (12 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Suppression des commentaires pendant l'executions

Revision 877 - Directory Listing
Modified Thu Mar 1 16:03:12 2007 UTC (12 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
p

ajoutr un read avant la boucle pour zpper le code=

Revision 874 - Directory Listing
Modified Thu Mar 1 14:36:47 2007 UTC (12 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
modif pour windows

Revision 873 - Directory Listing
Modified Thu Mar 1 12:17:00 2007 UTC (12 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 872 - Directory Listing
Modified Thu Mar 1 10:07:19 2007 UTC (12 years, 1 month ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Modif des sources C socket

Revision 870 - Directory Listing
Modified Wed Feb 21 16:41:20 2007 UTC (12 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Je modifi le nom de la fonction z_getc en z_getc_R . En effet z_getc existe dejas ailleurs sur le PC de stepg( (dans
/usr/lib/)
wq

Revision 869 - Directory Listing
Modified Wed Feb 21 13:47:08 2007 UTC (12 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 868 - Directory Listing
Modified Mon Feb 12 09:16:48 2007 UTC (12 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 867 - Directory Listing
Modified Wed Feb 7 15:36:42 2007 UTC (12 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
modif barre d'attente

Revision 866 - Directory Listing
Modified Tue Jan 30 13:47:54 2007 UTC (12 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 863 - Directory Listing
Modified Tue Jan 16 14:09:11 2007 UTC (12 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
no more indented comments and deletion of duplicated # include

Revision 862 - Directory Listing
Modified Tue Jan 16 13:16:16 2007 UTC (12 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
deletion espaces dans # include

Revision 858 - Directory Listing
Modified Mon Jan 8 10:34:21 2007 UTC (12 years, 3 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 857 - Directory Listing
Modified Mon Jan 8 10:30:16 2007 UTC (12 years, 3 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
ajout d'un patch qui bouvl tanty quie la reponse du socket est vide

Revision 853 - Directory Listing
Modified Fri Nov 24 12:37:56 2006 UTC (12 years, 5 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 852 - Directory Listing
Modified Fri Nov 24 09:51:21 2006 UTC (12 years, 5 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 849 - Directory Listing
Modified Mon Nov 20 17:39:52 2006 UTC (12 years, 5 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Modif des routines de Manolo pour l'adapter aux fonctions de socket de R

Revision 848 - Directory Listing
Modified Mon Nov 20 16:48:58 2006 UTC (12 years, 5 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Modifs pour copiler avec les fonctions C   bas niveau  de R destinees aux sockets

Revision 845 - Directory Listing
Modified Mon Nov 20 16:26:18 2006 UTC (12 years, 5 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Source en C pour recuperer les donnees compressees a tarvers les sockets

Revision 829 - Directory Listing
Modified Wed Oct 25 11:33:34 2006 UTC (12 years, 6 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 827 - Directory Listing
Modified Wed Oct 25 11:07:09 2006 UTC (12 years, 6 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
ajout des source C pour l'utilisation des sockets en mode compression zlib

Revision 791 - Directory Listing
Modified Fri Sep 1 19:46:29 2006 UTC (12 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
modif SET_ELEMENT -> SET_STRING_ELT demandee par Kurt Hornik

Revision 790 - Directory Listing
Modified Fri Sep 1 14:27:32 2006 UTC (12 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 789 - Directory Listing
Modified Fri Sep 1 14:19:46 2006 UTC (12 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Je remplace
SET_ELEMENT(chaine,i,mkChar(mot));
 par
SET_STRING_ELT(chaine,i,mkChar(mot));

d'apres le mail de Kurt

Simon,

When I run R CMD check on this using a current development version of R
with strict type checking turned on (see R-exts for more info on this),
I get


>   ss <- read.fasta(File = system.file("sequences/seqAA.fasta", package = "seqi

nr"), seqtype = "AA")
Error in s2c(sequences[[i]]) : SET_VECTOR_ELT() can only be applied to a 'list',
 not a 'character'

This can be fixed by changing

    SET_ELEMENT(chaine,i,mkChar(mot));

in util.c to

    SET_STRING_ELT(chaine,i,mkChar(mot));

Can you pls do this, and upload a new version?

Best
-k

Revision 743 - Directory Listing
Modified Tue Jul 18 13:07:50 2006 UTC (12 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
lsequtil commented

Revision 740 - Directory Listing
Modified Tue Jul 18 08:37:45 2006 UTC (12 years, 9 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 679 - Directory Listing
Modified Fri Apr 28 06:34:20 2006 UTC (12 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 671 - Directory Listing
Modified Mon Mar 27 12:47:06 2006 UTC (13 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
*** empty log message ***

Revision 669 - Directory Listing
Modified Mon Mar 27 11:30:50 2006 UTC (13 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
commentaires iso C90

Revision 638 - Directory Listing
Modified Wed Feb 15 15:28:00 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
Eureka ?

Revision 637 - Directory Listing
Modified Wed Feb 15 12:20:18 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
deletion de Rinternals puisque inclus par Rdefines

Revision 636 - Directory Listing
Modified Wed Feb 15 12:10:20 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
deletion headers standard inutiles

Revision 635 - Directory Listing
Modified Wed Feb 15 11:09:32 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
no more magic constant 100

Revision 634 - Directory Listing
Modified Wed Feb 15 10:57:49 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
R_alloc dans sous routines

Revision 633 - Directory Listing
Modified Wed Feb 15 09:16:36 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
passage R_alloc

Revision 632 - Directory Listing
Modified Tue Feb 14 16:20:01 2006 UTC (13 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Modif dans reshesh au niveau du malloc

Revision 631 - Directory Listing
Modified Tue Feb 14 14:12:46 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
caractere NULL copie a la main

Revision 629 - Directory Listing
Modified Tue Feb 14 13:38:09 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
ajout commentaires codes

Revision 628 - Directory Listing
Modified Tue Feb 14 10:06:11 2006 UTC (13 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Modif notees "S.P." : seq --> seqIn, tailles des chaines de char, etc...

Revision 627 - Directory Listing
Modified Mon Feb 13 21:08:45 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
more debug lines

Revision 625 - Directory Listing
Modified Mon Feb 13 19:57:20 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
factorisation du code

Revision 624 - Directory Listing
Modified Mon Feb 13 16:05:59 2006 UTC (13 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/src
Ptits commentaires

Revision 617 - Directory Listing
Modified Sat Feb 11 10:05:09 2006 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/src
passage en double, mode debug, et code_mt a zero

Revision 473 - Directory Listing
Modified Tue Oct 12 14:37:25 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
alignment.c

Revision 472 - Directory Listing
Modified Fri Oct 1 14:20:23 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
alignment.c

Revision 468 - Directory Listing
Modified Fri Oct 1 08:22:44 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
alignment.c

Revision 466 - Directory Listing
Modified Thu Sep 23 13:30:44 2004 UTC (14 years, 7 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
alignment.c

Revision 465 - Directory Listing
Modified Thu Sep 23 08:56:13 2004 UTC (14 years, 7 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
alignment.h

Revision 464 - Directory Listing
Modified Thu Sep 23 08:41:56 2004 UTC (14 years, 7 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
alignment.c

Revision 438 - Directory Listing
Modified Fri Sep 10 12:37:27 2004 UTC (14 years, 7 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
kaks.c

Revision 436 - Directory Listing
Modified Thu Sep 9 09:38:27 2004 UTC (14 years, 7 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
alignment.c

Revision 434 - Directory Listing
Modified Tue Sep 7 08:35:35 2004 UTC (14 years, 7 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
.#acnucfile

Revision 433 - Directory Listing
Modified Tue Sep 7 08:34:32 2004 UTC (14 years, 7 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
simext.h

Revision 432 - Directory Listing
Modified Tue Sep 7 08:20:18 2004 UTC (14 years, 7 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
arbrebin.c

Revision 423 - Directory Listing
Modified Fri Sep 3 08:56:40 2004 UTC (14 years, 7 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
R_acnuc.c

Revision 422 - Directory Listing
Modified Fri Sep 3 08:55:34 2004 UTC (14 years, 7 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/src
Makevars

Revision 409 - Directory Listing
Modified Wed Sep 1 12:24:48 2004 UTC (14 years, 7 months ago) by
Original Path: branches/seqinr_cran/seqinr/src
This commit was manufactured by cvs2svn to create branch 'seqinr_cran'.

Revision 405 - Directory Listing
Modified Tue Aug 31 13:58:45 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/src
alignment.c

Revision 384 - Directory Listing
Modified Thu Aug 5 13:55:27 2004 UTC (14 years, 8 months ago) by charif
Original Path: trunk/seqinr/src
kaks.c

Revision 382 - Directory Listing
Modified Thu Aug 5 13:53:49 2004 UTC (14 years, 8 months ago) by charif
Original Path: trunk/seqinr/src
R_acnuc.c

Revision 374 - Directory Listing
Modified Tue May 18 13:30:39 2004 UTC (14 years, 11 months ago) by charif
Original Path: trunk/seqinr/src
alignment.c

Revision 363 - Directory Listing
Modified Mon May 3 08:34:20 2004 UTC (14 years, 11 months ago) by charif
Original Path: trunk/seqinr/src
alignment.c

Revision 355 - Directory Listing
Modified Fri Apr 2 07:10:54 2004 UTC (15 years ago) by charif
Original Path: trunk/seqinr/src
*** empty log message ***

Revision 353 - Directory Listing
Modified Fri Apr 2 07:04:51 2004 UTC (15 years ago) by charif
Original Path: trunk/seqinr/src
	some new .c have been added

Revision 352 - Directory Listing
Modified Fri Apr 2 06:59:22 2004 UTC (15 years ago) by charif
Original Path: trunk/seqinr/src
	see mase.c

Revision 351 - Directory Listing
Modified Fri Apr 2 06:58:53 2004 UTC (15 years ago) by charif
Original Path: trunk/seqinr/src
	the functions of this file have been moved in the file
alignment.c

Revision 350 - Directory Listing
Modified Fri Apr 2 06:57:36 2004 UTC (15 years ago) by charif
Original Path: trunk/seqinr/src
	see alignment.c

Revision 349 - Directory Listing
Modified Fri Apr 2 06:56:51 2004 UTC (15 years ago) by charif
Original Path: trunk/seqinr/src
	This file contains some functions (taking from seaview)
which allow to read alignments in differents formats: mase,
clustal, msf, phylip, fasta.

Revision 346 - Directory Listing
Modified Tue Feb 24 14:53:17 2004 UTC (15 years, 2 months ago) by charif
Original Path: trunk/seqinr/src
	new fonction

Revision 345 - Directory Listing
Modified Tue Feb 24 14:53:00 2004 UTC (15 years, 2 months ago) by charif
Original Path: trunk/seqinr/src
	new function

Revision 328 - Directory Listing
Modified Fri Nov 21 13:02:29 2003 UTC (15 years, 5 months ago) by charif
Original Path: trunk/seqinr/src
timing.c

Revision 271 - Directory Listing
Modified Mon Nov 17 14:51:47 2003 UTC (15 years, 5 months ago) by charif
Original Path: trunk/seqinr/src
Makefile

Revision 270 - Directory Listing
Modified Mon Nov 17 14:50:22 2003 UTC (15 years, 5 months ago) by charif
Original Path: trunk/seqinr/src
timing.c

Revision 235 - Directory Listing
Modified Mon Oct 27 15:12:47 2003 UTC (15 years, 5 months ago) by charif
Original Path: trunk/seqinr/src
util.c

Revision 233 - Directory Listing
Modified Fri Oct 24 12:15:15 2003 UTC (15 years, 6 months ago) by charif
Original Path: trunk/seqinr/src
util.c

Revision 220 - Directory Listing
Modified Fri Oct 10 13:25:14 2003 UTC (15 years, 6 months ago) by charif
Original Path: trunk/seqinr/src
R_acnuc.c

Revision 189 - Directory Listing
Modified Wed Jul 23 17:04:21 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/src
chmod to 644

Revision 183 - Directory Listing
Modified Tue Jul 22 15:00:44 2003 UTC (15 years, 9 months ago) by charif
Original Path: trunk/seqinr/src
	I changed path for library

Revision 178 - Directory Listing
Modified Tue Jul 22 13:18:16 2003 UTC (15 years, 9 months ago) by charif
Original Path: trunk/seqinr/src
*** empty log message ***

Revision 175 - Directory Listing
Modified Tue Jul 22 12:56:21 2003 UTC (15 years, 9 months ago) by charif
Original Path: trunk/seqinr/src
*** empty log message ***

Revision 173 - Directory Listing
Modified Tue Jul 22 12:20:14 2003 UTC (15 years, 9 months ago) by charif
Original Path: trunk/seqinr/src
	tata

Revision 172 - Directory Listing
Modified Tue Jul 22 12:15:58 2003 UTC (15 years, 9 months ago) by charif
Original Path: trunk/seqinr/src
	New file

Revision 167 - Directory Listing
Modified Fri Jul 11 08:54:18 2003 UTC (15 years, 9 months ago) by charif
Original Path: trunk/seqinr/src
	I added some comments

Revision 164 - Directory Listing
Modified Wed Jun 25 14:00:13 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/src
gbemgener.c

Revision 163 - Directory Listing
Modified Wed Jun 25 13:03:15 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/src
.#acnucfile

Revision 162 - Directory Listing
Modified Wed Jun 25 13:02:49 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/src
.#mklink.csh

Revision 161 - Directory Listing
Modified Wed Jun 25 12:30:39 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/src
This script is used to create all the required symbolic links to
the acnuc sources

Revision 160 - Directory Listing
Modified Wed Jun 25 11:54:46 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/src
It works

Revision 159 - Directory Listing
Modified Wed Jun 25 11:52:47 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/src
gbemgener.c

Revision 158 - Directory Listing
Modified Wed Jun 25 09:25:27 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/src
test adding a symbolic link

Revision 139 - Directory Listing
Modified Thu Jun 12 12:40:22 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/src
	I removed a line

Revision 137 - Directory Listing
Modified Thu Jun 12 12:31:17 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/src
	I changed function name

Revision 127 - Directory Listing
Modified Mon Jun 2 12:34:02 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/src
	I corrected some bug in getExon

Revision 123 - Directory Listing
Modified Tue May 27 15:58:28 2003 UTC (15 years, 11 months ago) by charif
Original Path: trunk/seqinr/src
	I added two functions:
		-getAnnots
		-getAttribut

Revision 99 - Directory Listing
Modified Thu May 22 12:06:22 2003 UTC (15 years, 11 months ago) by charif
Original Path: trunk/seqinr/src
	i added two functions: getKey and getExon

Revision 46 - Directory Listing
Modified Wed Apr 30 22:50:01 2003 UTC (15 years, 11 months ago) by lobry
Original Path: trunk/seqinr/src
I have run chmod 644 on the file to set up the mandatory permissions
for source files. These are apparently disturbed by some text editors
such as nedit on the Sun and BBEdit on the mac.

Revision 45 - Directory Listing
Modified Tue Apr 29 12:14:04 2003 UTC (15 years, 11 months ago) by perriere
Original Path: trunk/seqinr/src
Comment lines shortened

Revision 19 - Directory Listing
Modified Fri Apr 25 08:21:50 2003 UTC (16 years ago) by charif
Original Path: trunk/seqinr/src
   ajout de la fonction translate

Revision 10 - Directory Listing
Added Wed Apr 23 08:08:21 2003 UTC (16 years ago) by ade2001
Original Path: trunk/seqinr/src
This commit was generated by cvs2svn to compensate for changes in r3,
which included commits to RCS files with non-trunk default branches.

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